BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZH07RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig531 1249 0.0
>3x_Contig531
Length = 2671
Score = 1249 bits (630), Expect = 0.0
Identities = 720/742 (97%), Gaps = 6/742 (0%)
Strand = Plus / Minus
Query: 48 gcgctgattttctttctaaatttgtcatctggatggtgtttctcagtatgcgagagtttt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1579 gcgctgattttctttctaaatttgtcatctggatggtgtttctcagtatgcgagagtttt 1520
Query: 108 ccacgttcgaatgactccttcattctcattattttttcgtaatattcgtgtatctcactt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1519 ccacgttcgaatgactccttcattctcattattttttcgtaatattcgtgtatctcactt 1460
Query: 168 tctatcgattcaatgttaatcttccccaggtcagataacctattcaaatctcttgtaaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1459 tctatcgattcaatgttaatcttccccaggtcagataacctattcaaatctcttgtaaaa 1400
Query: 228 tcgtatatgtcg-ggatatttttctctgatgattctttctatcacatgcaaaaaggataa 286
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1399 tcgtatatgtcgaggatatttttctctgatgattctttctatcacatgcaaaaaggataa 1340
Query: 287 attcttatcactgtttgtctttaccatggagagtttgttcaatgaggaaagtttgatacc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1339 attcttatcactgtttgtctttaccatggagagtttgttcaatgaggaaagtttgatacc 1280
Query: 347 ctgcgttttcttgttgttcataaagtttccgatctctacgacaatgtagaaaaattgttt 406
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1279 ctgcgttttcttgttgtccataaaaattccgatctctacgacaatgtagaaaaattgttt 1220
Query: 407 gagtctattcgagtttttgatcattgaggtcccatcatcgatcttctgtaattggtacaa 466
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1219 gagtctatacgagtttttgatcattgaggtcccatcatcgatcttctgtaattggtacaa 1160
Query: 467 gatgtcataatagtccttttcatatgtcagagcgatcaagagagaggagcttctgatttt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1159 gatgtcataatagtccttttcatatgtcagagcgatcaagagagaggagcttctgatttt 1100
Query: 527 ccagtaatatctcatgttgtaaaacatttcgaggtatattctatcagctctttcc-attt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1099 ccagtaatatctcatgttgtaaaacatttcgaggtatattctatcagctctttccaattt 1040
Query: 586 actgacg-tctttcttcggagccttaccggtttttcaatctgacgcatagggttcgaaag 644
||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1039 actgacgttcttctttcggagccttaccggttttccaatctgacgcatagggttcgaaag 980
Query: 645 atctaattttactttgggggatagttttcgagtccttcttgttaaag-actcaagaacgc 703
|||||||| |||||||||||||||||| |||| | |||||||||| ||||||||||||
Sbjct: 979 atctaattatactttgggggatagtttcgaagtcatccttgttaaagaactcaagaacgc 920
Query: 704 tatgattcttgattatatcatcggcacaccttagtactttttattaaaaggtcttcaaca 763
||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||
Sbjct: 919 tatgattcttgattatatcatcgtcacaccttagtac-ttttatcaaaaggtcttcaaca 861
Query: 764 ggaatttgaagaaaacatatgt 785
|||| ||||||||||||||||
Sbjct: 860 -gaatatgaagaaaacatatgt 840
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8305
Number of Sequences: 1807
Number of extensions: 8305
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)