BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC26ZH07RM1.SCF screened BAC_end (934 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig531 1249 0.0 >3x_Contig531 Length = 2671 Score = 1249 bits (630), Expect = 0.0 Identities = 720/742 (97%), Gaps = 6/742 (0%) Strand = Plus / Minus Query: 48 gcgctgattttctttctaaatttgtcatctggatggtgtttctcagtatgcgagagtttt 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1579 gcgctgattttctttctaaatttgtcatctggatggtgtttctcagtatgcgagagtttt 1520 Query: 108 ccacgttcgaatgactccttcattctcattattttttcgtaatattcgtgtatctcactt 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1519 ccacgttcgaatgactccttcattctcattattttttcgtaatattcgtgtatctcactt 1460 Query: 168 tctatcgattcaatgttaatcttccccaggtcagataacctattcaaatctcttgtaaaa 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1459 tctatcgattcaatgttaatcttccccaggtcagataacctattcaaatctcttgtaaaa 1400 Query: 228 tcgtatatgtcg-ggatatttttctctgatgattctttctatcacatgcaaaaaggataa 286 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1399 tcgtatatgtcgaggatatttttctctgatgattctttctatcacatgcaaaaaggataa 1340 Query: 287 attcttatcactgtttgtctttaccatggagagtttgttcaatgaggaaagtttgatacc 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1339 attcttatcactgtttgtctttaccatggagagtttgttcaatgaggaaagtttgatacc 1280 Query: 347 ctgcgttttcttgttgttcataaagtttccgatctctacgacaatgtagaaaaattgttt 406 ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct: 1279 ctgcgttttcttgttgtccataaaaattccgatctctacgacaatgtagaaaaattgttt 1220 Query: 407 gagtctattcgagtttttgatcattgaggtcccatcatcgatcttctgtaattggtacaa 466 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1219 gagtctatacgagtttttgatcattgaggtcccatcatcgatcttctgtaattggtacaa 1160 Query: 467 gatgtcataatagtccttttcatatgtcagagcgatcaagagagaggagcttctgatttt 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1159 gatgtcataatagtccttttcatatgtcagagcgatcaagagagaggagcttctgatttt 1100 Query: 527 ccagtaatatctcatgttgtaaaacatttcgaggtatattctatcagctctttcc-attt 585 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1099 ccagtaatatctcatgttgtaaaacatttcgaggtatattctatcagctctttccaattt 1040 Query: 586 actgacg-tctttcttcggagccttaccggtttttcaatctgacgcatagggttcgaaag 644 ||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1039 actgacgttcttctttcggagccttaccggttttccaatctgacgcatagggttcgaaag 980 Query: 645 atctaattttactttgggggatagttttcgagtccttcttgttaaag-actcaagaacgc 703 |||||||| |||||||||||||||||| |||| | |||||||||| |||||||||||| Sbjct: 979 atctaattatactttgggggatagtttcgaagtcatccttgttaaagaactcaagaacgc 920 Query: 704 tatgattcttgattatatcatcggcacaccttagtactttttattaaaaggtcttcaaca 763 ||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| Sbjct: 919 tatgattcttgattatatcatcgtcacaccttagtac-ttttatcaaaaggtcttcaaca 861 Query: 764 ggaatttgaagaaaacatatgt 785 |||| |||||||||||||||| Sbjct: 860 -gaatatgaagaaaacatatgt 840 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8305 Number of Sequences: 1807 Number of extensions: 8305 Number of successful extensions: 48 Number of sequences better than 1.0e-20: 1 length of query: 934 length of database: 10,358,551 effective HSP length: 16 effective length of query: 918 effective length of database: 10,329,639 effective search space: 9482608602 effective search space used: 9482608602 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)