BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZH08FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1732 1439 0.0
>3x_Contig1732
Length = 24266
Score = 1439 bits (726), Expect = 0.0
Identities = 769/778 (98%), Gaps = 4/778 (0%)
Strand = Plus / Plus
Query: 86 cttggtatagtttaacccatatagaatgaacaccacatatgcggcaagaatgtatttcgt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11204 cttggtatagtttaacccatatagaatgaacaccacatatgcggcaagaatgtatttcgt 11263
Query: 146 taaagctttcgaaaacttctcggaccttgcaatggccccgtacctaataatccagttgtc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11264 taaagctttcgaaaacttctcggaccttgcaatggccccgtacctaataatccagttgtc 11323
Query: 206 agatttcaaatccgcttcatgcttctccctagcaatctgctcctttgatttaggcttctt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11324 agatttcaaatccgcttcatgcttctccctagcaatctgctcctttgatttaggcttctt 11383
Query: 266 gtaaacggaatctggagaaggtatgtatgtacttttgcagcgtacaagatcaagaacctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11384 gtaaacggaatctggagaaggtatgtatgtacttttgcagcgtacaagatcaagaacctt 11443
Query: 326 atatcccgaacctaagcttggcccacattgcgttactctcaatggcccccgcaagaaatt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11444 atatcccgaacctaagcttggcccacattgcgttactctcaatggcccccgcaagaaatt 11503
Query: 386 gcgtctgacagcaaacattagtgaaacagatcacaggtgattcttgagaccctgttaaaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11504 gcgtctgacagcaaacattagtgaaacagatcacaggtgattcttgagaccctgttaaaa 11563
Query: 446 cagaccagaagaccatatcggaaggctgttttgtcggttcttttgcgttaactcaagata 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11564 cagaccagaagaccatatcggaaggctgttttgtcggttcttttgcgttaactcaagata 11623
Query: 506 aagagagagcgagatgagacggtttcgaggttgaatcgatcttgaaaaatttagaatatc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11624 aagagagagcgagatgagacggtttcgaggttgaatcgatcttgaaaaatttagaatatc 11683
Query: 566 acgtggtacaattgggttgagtgaatgtcttaataaccaagtggtgttgacccaatccaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11684 acgtggtacaattgggttgagtgaatgtcttaataaccaagtggtgttgacccaatccaa 11743
Query: 626 caccactgacaacaatgaattctcatgcagttggctcagactcgaggttatgaatatata 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11744 caccactgacaacaatgaattctcatgcagttggctcagactcgaggttatgaatatata 11803
Query: 686 cagatatctattgttttttataaagtgttctattcgctagcaaaagtggcagcgacgaac 745
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 11804 cagatatctattg-tttttataaagtgttctattcgctagcaaaagtggcagcgacg-ac 11861
Query: 746 ttatgggaaaacgacagtggcatctgcataaactttaacggacttagcgtctgcttttaa 805
| |||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct: 11862 taatgggaaaacgacagtggcatctgcatagaccttaacggacttagcgtctgc-tttaa 11920
Query: 806 tcttaccccaggaaacagcctcattttggtcttgccccagcatcagaaccgtcaaatt 863
||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||
Sbjct: 11921 tcttaccccaggaaacagcctca-tctggtcttgcaccagcatcagaaccgtcaaatt 11977
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5477
Number of Sequences: 1807
Number of extensions: 5477
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)