BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZH08RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1582 1370 0.0
>3x_Contig1582
Length = 14087
Score = 1370 bits (691), Expect = 0.0
Identities = 739/751 (98%), Gaps = 3/751 (0%)
Strand = Plus / Plus
Query: 48 ctaagaaattggaggttttgttccaggtgttatccatgaagaaaat-cagagaaagatga 106
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 870 ctaagaaattggaggttttgatccaggtgttatccatgaagaaaatacagagaaagatga 929
Query: 107 tgtcagattataaaaatcttgagaaaatgctcactcttttattgcgtgcatctcgtctcg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 tgtcagattataaaaatcttgagaaaatgctcactcttttattgcgtgcatctcgtctcg 989
Query: 167 actcttacttcttagtctcactttgtgatcaagtcatggagagtgtgtcggtcctaatca 226
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 990 actcttacttcttagtctcactttgtgatcaagtcatggagagtgtgtcgggcctaatca 1049
Query: 227 aaattccatctgctgtatgcctatttgacgaatctgcgattgattgcctaaaaccaaatg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 aaattccatctgctgtatgcctatttgacgaatctgcgattgattgcctaaaaccaaatg 1109
Query: 287 atgaaacaatagataaacaagttgccgttgttaaaacagctaaggataggaaacgaaagg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1110 atgaaacaatagataaacaagttgccgttgttaaaacagctaaggataggaaacgaaagg 1169
Query: 347 agtatttctcgcaactcgaaaccttgcatatcaatcttgttgatttccaaaggaaagacc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1170 agtatttctcgcaactcgaaaccttgcatatcaatcttgttgatttccaaaggaaagacc 1229
Query: 407 cacagttgcgttggatgtctatttgtcacatattgcgtatagtgcaggtcattcaaatga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1230 cacagttgcgttggatgtctatttgtcacatattgcgtatagtgcaggtcattcaaatga 1289
Query: 467 atttagagattaaacctaaccaggaggtgttaattcaaagtttcgagttaacgaagacaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1290 atttagagattaaacctaaccaggaggtgttaattcaaagtttcgagttaacgaagacaa 1349
Query: 527 aacatccatctctcatatcgaattgtatggtaacaatgttaaatgtttgtaacaaaatga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1350 aacatccatctctcatatcgaattgtatggtaacaatgttaaatgtttgtaacaaaatga 1409
Query: 587 tttcccttgggaactataactacgatatcgattccacctatcgcacagactatgtgagac 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1410 tttcccttgggaactataactacgatatcgattccacctatcgcacagactatgtgagac 1469
Query: 647 aatatgtggaatacttggacacatcaaaaccaaactttgagggagaatactttaaaagaa 706
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 1470 aatatgtggaatacttggacacatcaaaaccaaactttgaggaagaatactttaaagaaa 1529
Query: 707 tttataacgttgaaaatcctaacttttttgtggacttcaaaagcgtttgttggttggtta 766
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1530 ttaataacgttgaaaatcctaacttttttgtggac-tccaaagcgtttgttggttggtta 1588
Query: 767 ttcccgagaaaggcctatgggcgttgtcaaa 797
| ||||| ||||||||||||||||||||||
Sbjct: 1589 -tgccgaggaaggcctatgggcgttgtcaaa 1618
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6945
Number of Sequences: 1807
Number of extensions: 6945
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)