BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC26ZH09FM1.SCF screened BAC_end
         (915 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1272                                                        1273   0.0  

>3x_Contig1272 
          Length = 8315

 Score = 1273 bits (642), Expect = 0.0
 Identities = 722/742 (97%), Gaps = 5/742 (0%)
 Strand = Plus / Plus

                                                                        
Query: 85   taccaaatgtaaatgaaggtttagatgactcagccggtttttcagaggttgttgaggtac 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3487 taccaaatgtaaatgaaggtttagatgactcagccggtttttcagaggttgttgaggtac 3546

                                                                        
Query: 145  cgaatgtgaaagaaggctttttagcttcatcattactgttttccttgcccatagctccaa 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3547 cgaatgtgaaagaaggctttttagcttcatcattactgttttccttgcccatagctccaa 3606

                                                                        
Query: 205  atgtaaaggaaggctttgatgaatctttgttttcagttgctgtcctttgcactggagcag 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3607 atgtaaaggaaggctttgatgaatctttgttttcagttgctgtcctttgcactggagcag 3666

                                                                        
Query: 265  agaagctaaacgatggtttagagtccgccgatggagcaggggcagagaatgtaccgaagg 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3667 agaagctaaacgatggtttagagtccgccgatggagcaggggcagagaatgtaccgaagg 3726

                                                                        
Query: 325  tgctagctggctttgcttcttcctttttattttcactttctttggccaaatctttattgt 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3727 tgctagctggctttgcttcttcctttttattttcactttctttggccaaatctttattgt 3786

                                                                        
Query: 385  tgctgaaagaaaatgagaacggagatgatgaattaccattatcagccttatttgacccaa 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3787 tgctgaaagaaaatgagaacggagatgatgaattaccattatcagccttatttgacccaa 3846

                                                                        
Query: 445  aggcaggaagagctggtttgcttccctcatttttctctatggatggtgcggacgcagaag 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3847 aggcaggaagagctggtttgcttccctcatttttctctatggatggtgcggacgcagaag 3906

                                                                        
Query: 505  gagggaatgttggtttagattgtgaagagttcccaaatatactagctggcttgttatccg 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3907 gagggaatgttggtttagattgtgaagagttcccaaatatactagctggcttgttatccg 3966

                                                                        
Query: 565  ttggtttttcagctggttcagattcctctgtccttgaagcatcattctttggtaaagtaa 624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3967 ttggtttttcagctggttcagattcctctgtccttgaagcatcattctttggtaaagtaa 4026

                                                                        
Query: 625  aggcactggacgatacagtcccattaaacgttaattggggtccccttgatctctatc-tc 683
            ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||
Sbjct: 4027 aggcactggacgatacagtcccattaaacgtaaattggggt-cccttgatctctatcgtc 4085

                                                                        
Query: 684  gctgtcgctatcgctgtcaggttcctttcgcttattcccaccggaacttgaaagcggatc 743
            |||||| |||||||||||||||||||| ||||||||||||||| | ||  || |||||||
Sbjct: 4086 gctgtc-ctatcgctgtcaggttccttacgcttattcccaccgaagctgaaaggcggatc 4144

                                                                        
Query: 744  agacctcctttgttttcttatccaaaacaaactttgggccttcaacattaacggcttggt 803
            |||| | | ||| ||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct: 4145 agacgt-cgttggtttcttagccaagacaaactttgggccttcaacattaacggc-tggt 4202

                                  
Query: 804  tttttctttttagaatcactat 825
            |||| || || |||||||||||
Sbjct: 4203 ttttcctcttcagaatcactat 4224


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7407
Number of Sequences: 1807
Number of extensions: 7407
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)