BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZH09RM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1747 1015 0.0
>3x_Contig1747
Length = 15671
Score = 1015 bits (512), Expect = 0.0
Identities = 532/539 (98%)
Strand = Plus / Minus
Query: 55 cttatatataaattatgctgattctgtattgcactaacaagaatatgtcgtttggatgta 114
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 6109 cttatatataaattatgctgaagctgtattgcactaacaagaatatgtcgtttggatgta 6050
Query: 115 gttgtaattgagagtaaaaaaatttggttcttattcaaatgattggccttagtcgctgac 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6049 gttgtaattgagagtaaaaaaatttggttcttattcaaatgattggccttagtcgctgac 5990
Query: 175 ttcgtcatcagcgtatctgggctcaatgtcaaagatcaattcatatttccgccattttac 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5989 ttcgtcatcagcgtatctgggctcaatgtcaaagatcaattcatatttccgccattttac 5930
Query: 235 gcgcaaaggactttccgcattgcaggcctcggcgtcatcttctttatcgtattcatctag 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5929 gcgcaaaggactttccgcattgcaggcctcggcgtcatcttctttatcgtattcatctag 5870
Query: 295 ccagtcccagttggaattgaatttgtctatattatcttccaaaaactgcgttagctgctc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5869 ccagtcccagttggaattgaatttgtctatattatcttccaaaaactgcgttagctgctc 5810
Query: 355 tccatgttggaccatagcggcgtcgttagttaaaaaattccaaatatgaactagatagaa 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5809 tccatgttggaccatagcggcgtcgttagttaaaaaattccaaatatgaactagatagaa 5750
Query: 415 cttcaaggattttatacctcgaaggaatccctgatcctctctgtttgggaaatgangtgc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5749 cttcaaggattttatacctcgaaggaatccctgatcctctctgtttgggaaatgaggtgc 5690
Query: 475 aatcttaaaacgatctagtgacttttctatatcacgatcagtgacacacctagcgaaatc 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5689 aatcttaaaacgatctagtgacttttctatatcacgatcagtgacacacctagcgaaatc 5630
Query: 535 tataatgtttacctttacccgagatcgtttgttcttaggtttgtcgccttcgtaaaata 593
||||||||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct: 5629 tataatgtttaccttcacccgagatcgtttgttctgagggttgtcgccatcgtaaaata 5571
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8353
Number of Sequences: 1807
Number of extensions: 8353
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)