BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZH10FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1328 0.0
>3x_Contig1780
Length = 27883
Score = 1328 bits (670), Expect = 0.0
Identities = 755/778 (97%), Gaps = 4/778 (0%)
Strand = Plus / Minus
Query: 88 tgattagcaataaaagttgaataaaattgcgttgatgcttcgtgttaacgttcatgaatc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9188 tgattagcaataaaagttgaataaaattgcgttgatgcttcgtgttaacgttcatgaatc 9129
Query: 148 aggtaaacagagtatggtaaaatattgtgtgacatttgcagcaaggaatgtgatttgatc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9128 aggtaaacagagtatggtaaaatattgtgtgacatttgcagcaaggaatgtgatttgatc 9069
Query: 208 cgatgcttaggaatcattgctttcattatatttctattattacatggttatgagaggctc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9068 cgatgcttaggaatcattgctttcattatatttctattattacatggttatgagaggctc 9009
Query: 268 agttaaagaaatggatggatcgcaaatataacaagtaacacaaagtatcctcttgctcgc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9008 agttaaagaaatggatggatcgcaaatataacaagtaacacaaagtatcctcttgctcgc 8949
Query: 328 ggctacatacgcagatttctttaccttataataaatctaacatacaagcagattacctgg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8948 ggctacatacgcagatttctttaccttataataaatctaacatacaagcagattacctgg 8889
Query: 388 cgtatgggtggtatccacgtctatctctgcttccaccgccatacccattaccaccacggc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8888 cgtatgggtggtatccacgtctatctctgcttccaccgccatacccattaccaccacggc 8829
Query: 448 gggaatcacgatcacggccaccacctccgcgatagtttgaagatgggccacgacagctgt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8828 gggaatcacgatcacggccaccacctccgcgatagtttgaagatgggccacgacagctgt 8769
Query: 508 cacggtcgcggttagacgagccataactgctacgatcagagttgcgatcgtatgctctgt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8768 cacggtcgcggttagacgagccataactgctacgatcagagttgcgatcgtatgctctgt 8709
Query: 568 gtcctgaacgacgagaatcatcacggcttgatgaattatcgtatcttgagtcatctccag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8708 gtcctgaacgacgagaatcatcacggcttgatgaattatcgtatcttgagtcatctccag 8649
Query: 628 attctactccactgttactacggtttgccattatttgagctcccaatagtagtgacacca 687
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8648 attctactccactgttactacgg-ttgccattatttgagctcccaatagtagtgacacca 8590
Query: 688 ttactgtcgtcgttgtgtttgagggtggatgaatggcttggt-gagatcctgcaccactt 746
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 8589 ttactgtcgtcgttgtgttgaggggtggatgaatggcttggtggagatcctgcaccactt 8530
Query: 747 tgagaagttgtttgccctgcaagaagaacgcccatcatacccatcatttgttgcatttgg 806
||||||| | ||| |||||| ||||| ||||||||||||||||||| |||||||||||
Sbjct: 8529 tgagaaggttgttggcctgcaggaagaccgcccatcatacccatcatctgttgcatttgt 8470
Query: 807 tggattttgctgttggaaacatttgattttaatcaaacccagtttggtggtgcatttg 864
|| | ||||||||||| ||||||||| | ||||| | |||||||| || ||||||||
Sbjct: 8469 tgca-tttgctgttgg-aacatttgagtataatcgataccagtttgttgttgcatttg 8414
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5809
Number of Sequences: 1807
Number of extensions: 5809
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)