BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZH11FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1296 1459 0.0
>3x_Contig1296
Length = 7334
Score = 1459 bits (736), Expect = 0.0
Identities = 831/852 (97%), Gaps = 8/852 (0%)
Strand = Plus / Plus
Query: 87 ggaaacaaaacgctttgctaccggttactactggtaaggaattatggtttactgttttgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 ggaaacaaaacgctttgctaccggttactactggtaaggaattatggtttactgttttgt 1528
Query: 147 cattaagtattaccaaacgtcaggttaaaaactgggaatatagatcaccaatgcgaaact 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1529 cattaagtattaccaaacgtcaggttaaaaactgggaatatagatcaccaatgcgaaact 1588
Query: 207 cgcattgtgatctcagctgtgaaacagaaaacaaaaggaaaagacgtggaatctcattag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 cgcattgtgatctcagctgtgaaacagaaaacaaaaggaaaagacgtggaatctcattag 1648
Query: 267 tacctcttcaattacgtgactggaaatagcggtgatggcattacgtcggaggtgaaaagt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 tacctcttcaattacgtgactggaaatagcggtgatggcattacgtcggaggtgaaaagt 1708
Query: 327 ctaatcacagtggaacaaaggtattcaaaccaggtgtaaaataaaaactggattttcttc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1709 ctaatcacagtggaacaaaggtattcaaaccaggtgtaaaataaaaactggattttcttc 1768
Query: 387 cgatatagatactaggtttccacaatgtcaagctccgatttccaatacgcaaaagcatgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1769 cgatatagatactaggtttccacaatgtcaagctccgatttccaatacgcaaaagcatgt 1828
Query: 447 ttttcatgtgccgatcgatgcttttcctacgaacctcgatgttcgtttctcggtattttc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829 ttttcatgtgccgatcgatgcttttcctacgaacctcgatgttcgtttctcggtattttc 1888
Query: 507 tcagttttgagtatcacagacagttactgcaccaggtggacgccggaactccgaacctga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1889 tcagttttgagtatcacagacagttactgcaccaggtggacgccggaactccgaacctga 1948
Query: 567 gctgttgaggtccgaatagtaaataatattctcggatggtatcgagttttttgaaacaaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1949 gctgttgaggtccgaatagtaaataatattctcggatggtatcgagttttttgaaacaaa 2008
Query: 627 ttcataccacacacttcttctgcccccgttccacaattattttctcattctgtccaacta 686
|||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 2009 ttcataccacacac-tcttctg-ccccgttccacaatta-tttctcattctgtccaacta 2065
Query: 687 aagaataagacaggataaatatttaaatttgaaagaacgtacgtctgagttatatatttg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2066 aagaataagacaggataaatatttaaatttgaaagaacgtacgtctgagttatatatttg 2125
Query: 747 tgttgccagtacacttccgagttgtggtacaattaaaaccattcatgtctctgggaatgt 806
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2126 tgttgccagtacacttccgagttgtggtacaattaaaaccattcatgtctctgtgaatgt 2185
Query: 807 ttgctaggtattcttgtggggagattaaactaagttttctgtgaattgtaaactatgtgc 866
|||||||||||| ||||| ||||||||||||| |||||||||| |||| || |||||||
Sbjct: 2186 ttgctaggtatttttgtgtggagattaaactaggttttctgtg-attgaaacgtatgtgc 2244
Query: 867 ttatga-tgttacaaattgttaactttccttacccaaaatttagggggatgcttggtctt 925
||||| ||| |||||||||||||| | | |||||||||| || |||||||| ||||| |
Sbjct: 2245 -tatgagtgtaacaaattgttaactatgcctacccaaaatataaggggatgc-tggtc-t 2301
Query: 926 tttcttggttct 937
||||||||||||
Sbjct: 2302 tttcttggttct 2313
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6345
Number of Sequences: 1807
Number of extensions: 6345
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)