BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZH12FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1088 753 0.0
3x_Contig469 256 7e-68
>3x_Contig1088
Length = 4585
Score = 753 bits (380), Expect = 0.0
Identities = 447/464 (96%), Gaps = 4/464 (0%)
Strand = Plus / Plus
Query: 449 gtatgtttgtcgaatctcttgctggtaaagcaggtgcattgcatggtattgctcaagatt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtatgtttgtcgaatctcttgctggtaaagcaggtgcattgcatggtattgctcaagatt 61
Query: 509 ctactccatggactttcaacgagagtgacacccccgctgactacttcggtgatcaactag 568
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 cttttccatggactttcaacgagagtgacacccccgctgactacttcggtgatcaactag 121
Query: 569 caaaagcaggttacaactaccacggtaacgaaccaatgtactccggtgcaactggtgaag 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 caaaagcaggttacaactaccacggtaacgaaccaatgtactccggtgcaactggtgaag 181
Query: 629 aacttagagcggatatctacattggtgttgtttactatcaaagattgcgtcacatggtta 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 aacttagagcggatatctacattggtgttgtttactatcaaagattgcgtcacatggtta 241
Query: 689 acgactagttccaagtgcgttccactggtcctgtcaacagtctaacgatgcaacctgtca 748
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 acgataagttccaagtgcgttccactggtcctgtcaacagtctaacgatgcaacctgtca 301
Query: 749 agggtagaaagagacacagtggtattcgtgtatgtgaaatggaaagagatgcatttaatc 808
||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 302 agggtagaaagagacacggtggtattcgtgtaggtgaaatggaaagagatgca-ttaatc 360
Query: 809 ggtcatggtacctcatttctattgccagaatcgtttactgaactgttcagatgacacaca 868
||||||||||||||||| ||||||| || ||||| ||||||||||||||||| |||||||
Sbjct: 361 ggtcatggtacctcattcctattgcaag-atcgtctactgaactgttcagattacacaca 419
Query: 869 aaca-ctgtttgtcgggactggggtgctat-tttaccacacaat 910
|||| |||||||||| ||||| |||||||| || ||||||||||
Sbjct: 420 aacagctgtttgtcgtgactgtggtgctatcttaaccacacaat 463
>3x_Contig469
Length = 1772
Score = 256 bits (129), Expect = 7e-68
Identities = 139/141 (98%), Gaps = 1/141 (0%)
Strand = Plus / Plus
Query: 90 cgacgatggtttaccactgataggtacctacgttgaagaaggtgatccaatttgcgcata 149
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1632 cgacgatggtttaccactgataggtacctacgttgaagaaggtgatccaatttgtgcata 1691
Query: 150 ctttgatgacaccttgaataaaacgaagatcaaaacttaccactcttctgaacctgcata 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1692 ctttgatgacaccttgaataaaacgaagatcaaaacttaccactcttctgaacctgcata 1751
Query: 210 tatcgaggaagttaaattaat 230
|| ||||||||||||||||||
Sbjct: 1752 ta-cgaggaagttaaattaat 1771
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5412
Number of Sequences: 1807
Number of extensions: 5412
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 2
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)