BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC26ZH12RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1610 1209 0.0
>3x_Contig1610
Length = 13981
Score = 1209 bits (610), Expect = 0.0
Identities = 664/682 (97%)
Strand = Plus / Plus
Query: 79 gatttgtgaaagacaagtgttacttcaatacgtcatatatcgacactcactcaaaacaca 138
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 2476 gatttgtgaaagacaagtgttagttcaatacgtcagatatcgacactcactcaaaacaca 2535
Query: 139 atggtttctcaattattcgaagaaaaggtatgtggaatcgttgttgcaatggcttttgat 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2536 atggtttctcaattattcgaagaaaaggtatgtggaatcgttgttgcaatggcttttgat 2595
Query: 199 ttcccttaataatcatactaaccgcattttacttttatctgcaggctaaagctgtcaatg 258
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 2596 ttcccttaataatcatactaaccgcatcttacatttatctgcaggctaaagctgtcaatg 2655
Query: 259 aattgccatcaactccaaataacgatgaattgttgaaattgtatgctctatacaagcaag 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2656 aattgccatcaactccaaataacgatgaattgttgaaattgtatgctctatacaagcaag 2715
Query: 319 caaccgtcggtgacaacaccaaggaaaaaccaggcatgttcaacttgaatgaccgttaca 378
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2716 caaccgtcggtgacaacaccaaggaaaaaccaggcatgttcaacttgaaggaccgttaca 2775
Query: 379 agtgggacgcctgggaattgttgaagggcacttcccaagaagatgccgaacaacagtaca 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2776 agtgggacgcctgggaattgttgaagggcacttcccaagaagatgccgaacaacagtaca 2835
Query: 439 tcgaattggttgaccaattgatcaagaaatacgccccatagagctggatggtctcgcaag 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2836 tcgaattggttgaccaattgatcaagaaatacgccccatagagctggatggtctcgcaag 2895
Query: 499 ttattgcatcatctaactaactatctatatctacatatatattatccttgatccatatag 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttattgcatcatctaactaactatctatatctacatatatattatccttgatccatatag 2955
Query: 559 ctaatgataatacccttattactcggtttgaaacacgaattacaagtcacgtgaacaagc 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2956 ctaatgataatacccttattactcggtttgaaacacgaattacaagtcacgtgaacaagc 3015
Query: 619 taacgccaactatttacccggctatttgcagttgagtggcaaataattctttctttccta 678
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 3016 taacgccaactatttacccggctatttgcagttgagtggcaaaaaattctttcttcccta 3075
Query: 679 gcagtatataagttacccttccgtaaacatgaacaccgaccctattttttttttcattta 738
||||||||||||||||||| | |||||| || ||| |||||||||| | ||||||||
Sbjct: 3076 gcagtatataagttaccctccgttaaacaggagcacgatccctatttttctcttcattta 3135
Query: 739 tggggttcatacattggtttct 760
|||||||||||||||| |||||
Sbjct: 3136 tggggttcatacattgttttct 3157
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,338
Number of Sequences: 1807
Number of extensions: 10338
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)