BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZA01FM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1769 940 0.0
>3x_Contig1769
Length = 25795
Score = 940 bits (474), Expect = 0.0
Identities = 577/602 (95%), Gaps = 7/602 (1%)
Strand = Plus / Plus
Query: 119 tgcaaagaaggacatataattagtgaaatcagtgcttatttgaccggaaaatgttgggaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4780 tgcaaagaaggacatataattagtgaaatcagtgcttatttgaccggaaaatgttgggaa 4839
Query: 179 gacctcgaaaggctcaacggcaatgatctattaaaatactgggccccgattgatgcgccc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4840 gacctcgaaaggctcaacggcaatgatctattaaaatactgggccccgattgatgcgccc 4899
Query: 239 ctcgaaccccttttttc-ggtagccttgtgcaaaacaggaagctagcagagctcttgcaa 297
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4900 ctcgaaccccctaacaccggtagccttgtgcaaaacaggaagctagcagagctcttgcaa 4959
Query: 298 ttggtagcagacaatgggaaagatggattttacaaaggtgtagttgctgaatctataata 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4960 ttggtagcagacaatgggaaagatggattttacaaaggtgtagttgctgaatctataata 5019
Query: 358 gaagaaatgaaaa-cacgc-ggtggtttaatggatatggatgatttggctgctcataaga 415
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5020 gaagaaatgaaaaacacgccggtggtttaatggatatggatgatttggctgctcataaga 5079
Query: 416 gtgatttcgttgacccaatatatttggatttcctggagcataaaatttgggaaatacctc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5080 gtgatttcgttgacccaatatatttggatttcctggagcataaaatttgggaaatacctc 5139
Query: 476 caaactctcaagggctcgtagttttacttgcattaggaataataagagagcttgacaacc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5140 caaactctcaagggctcgtagttttacttgcattaggaataataagagagcttgacaacc 5199
Query: 536 agaaattgattaatctgcactcaatgcaaagaaattctgtggagtatttacacatgctca 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5200 agaaattgattaatctgcactcaatgcaaagaaattctgtggagtatttacacatgctca 5259
Query: 596 ttgaatgcctcaagttatccttttatgattcaaaccaatatgtggtctgacccctaattg 655
||||||||||||||||| |||||||||||||| || ||||||| |||||| |||||||||
Sbjct: 5260 ttgaatgcctcaagttagccttttatgattcagacgaatatgt-gtctga-ccctaattg 5317
Query: 656 ttttggaagccgacatcttacattgtatttctcttaaaggattttttttagagtcgtgca 715
| ||||||||||||| ||||| | ||| |||| |||||| | ||| |||||||||||
Sbjct: 5318 -tcaggaagccgacatcctacatcg-attactctcaaaggactatttaaagagtcgtgca 5375
Query: 716 aa 717
||
Sbjct: 5376 aa 5377
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7542
Number of Sequences: 1807
Number of extensions: 7542
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)