BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZA01RM1.SCF screened BAC_end
(1096 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1166 821 0.0
>3x_Contig1166
Length = 5040
Score = 821 bits (414), Expect = 0.0
Identities = 480/494 (97%), Gaps = 6/494 (1%)
Strand = Plus / Minus
Query: 82 ctttacatcaggtttgggtggtaaaaacatactangtcaattgtgaaagaatatacaaaa 141
||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||
Sbjct: 1819 ctttacatcaggtttgggtgg-aaaaacatacta-gtcaattg-gaaagaatatacaaaa 1763
Query: 142 agaaagttttacagttaagctctgattgcataaaaattgatgagaacattgatacctttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1762 agaaagttttacagttaagctctgattgcataaaaattgatgagaacattgatacctttg 1703
Query: 202 ctgttgtaaaacataaactaccgaaaagtgtcaaactttcccccgaaaaaaaccctatct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1702 ctgttgtaaaacataaactaccgaaaagtgtcaaactttcccccgaaaaaaaccctaaca 1643
Query: 262 aacgattgaaacttttttcaaacaatatttaatgtgacgctgctattaaaaagttggtca 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 aacgattgaaacttttttcaaacaatatttaatgtgacgctgctattaaaaagttggtca 1583
Query: 322 gctttgaatctgtttgtttatatatacataaagtgccattggtgaagatactctctttgt 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 gctttgaatctgtttgtttatatatacataaagtgccattggtgaagatactctctttgt 1523
Query: 382 t-cacgctcttttcgtgtcatagtgttttgtttcttgatttatccgtccaatattttcta 440
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1522 tacacgctcttttcgtgtcatagtgttttgtttcttgatttatccgtccaatattttcta 1463
Query: 441 tgctcatcgctttcattttttttttgtttttctctcatatattaaatacagttggcaata 500
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1462 tgctcatcgctttca-tttttttttgtttttctctcatatatcaaatacagttggcaata 1404
Query: 501 caaaaaaaattaacttaacgactacatccaaagaattaaggcactttccagtttttgctt 560
|||||||||||||||||| ||| |||||||||||||||||||||||||||||| | ||
Sbjct: 1403 caaaaaaaattaacttaa-gacgacatccaaagaattaaggcactttccagttatgcttt 1345
Query: 561 ttgtattgcactga 574
||||||||||||||
Sbjct: 1344 ttgtattgcactga 1331
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,489
Number of Sequences: 1807
Number of extensions: 17489
Number of successful extensions: 283
Number of sequences better than 1.0e-20: 1
length of query: 1096
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1080
effective length of database: 10,329,639
effective search space: 11156010120
effective search space used: 11156010120
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)