BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZA02RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1668 1358 0.0
>3x_Contig1668
Length = 13429
Score = 1358 bits (685), Expect = 0.0
Identities = 772/797 (96%), Gaps = 3/797 (0%)
Strand = Plus / Minus
Query: 50 aagaatttttcaatacacatctctagcgtcttcgttccaccaacatgatctacaatcttg 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1735 aagaatttttcaatacacatctctagcgtcttcgttccaccaacatgatctacaatcttg 1676
Query: 110 tcccatttgtcttcatacatttctaaaccttctaataataataaaagctcttggtcggtc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1675 tcccatttgtcttcatacatttctaaaccttctaataataataaaagctcttggtcggtc 1616
Query: 170 caggaactgttgcttaccgtactgttttcggtcaacttgataaaatctgatgagtgaaaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1615 caggaactgttgcttaccgtactgttttcggtcaacttgataaaatctgatgagtgaaaa 1556
Query: 230 ttcgcaccgaagtgaccttcttggaagcagcgcgaacagatgttgacatttttggatctt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1555 ttcgcaccgaagtgaccttcttggaagcagcgcgaacagatgttgacatttttggatctt 1496
Query: 290 agattatggtagcgaattgtagtggcatcgttaccacaactgaagcatacgtattgttta 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1495 agattatggtagcgaattgtagtggcatcgttaccacaactgaagcatacgtattgttta 1436
Query: 350 ttgatttgccttgcttgtaaattgagttgacgtaaagcattgaagtcatggattgtatca 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1435 ttgatttgccttgcttgtaaattgagttgacgtaaagcattgaagtcatggattgtatca 1376
Query: 410 tagacattttttcttaaagaaagattgactgggaatggctctggacgtttgaattccaat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1375 tagacattttttcttaaagaaagattgactgggaatggctctggacgtttgaattccaat 1316
Query: 470 ttcttttcctctttgttatcatctgcagactccgctgtggcattcgcagcatcatctgct 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1315 ttcttttcctctttgttatcatctgcagactccgctgtggcattcgcagcatcatctgct 1256
Query: 530 actgcaggcgttgatcctacgggagtcgtttcggcctcagtaacctctggtggtacgaac 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1255 actgcaggcgttgatcctacgggagtcgtttcggcctcagtaacctctggtggtacgaac 1196
Query: 590 ggtttcaaaccttgaggtgtatcaagtaccaccttggaaatgaccgggtaaactaggacc 649
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 1195 ggtttcaaaccttgaggtgtatcaagtaccacc-tggaaatgaccggtaaaactaggacc 1137
Query: 650 aacaagtgatggtttaaatcttggatctatttgat-attaattagaccccatttctccaa 708
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1136 aacaagtgatggtttagatcttggatctatttgataattaattagaccccatttctccaa 1077
Query: 709 aaactgatgaatttttaaaacagatgccacattcattacaatattttttttgattgcagt 768
||||||||||||||| |||||||||||||||| ||| |||||||| || |||| |||||
Sbjct: 1076 aaactgatgaattttcaaaacagatgccacatccatagcaatatttcttctgatggcagt 1017
Query: 769 cactggcaagttattattaggagacaccctttttgttgtttatattaaaattcctaacat 828
||||| ||||| | || |||||||| ||| | || ||||||| |||||||||||||||
Sbjct: 1016 cactgtcaagtattcataaggagacaacctatatg-tgtttatcataaaattcctaacat 958
Query: 829 ccttttccgcctttgga 845
|||| | ||||||||||
Sbjct: 957 ccttatacgcctttgga 941
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8883
Number of Sequences: 1807
Number of extensions: 8883
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)