BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZA03FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1565 1221 0.0
>3x_Contig1565
Length = 10922
Score = 1221 bits (616), Expect = 0.0
Identities = 669/683 (97%), Gaps = 3/683 (0%)
Strand = Plus / Plus
Query: 87 tctgtctgactgttgttatttaatcgggatcgttaaccgaaagtatgagatgtagagtat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5260 tctgtctgactgttgttatttaatcgggatcgttaaccgaaagtatgagatgtagagtat 5319
Query: 147 acgcttaacttagagtttatacaggtcgtacctgcttatactctgaggacagggtcggtt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5320 acgcttaacttagagtttatacaggtcgtacctgcttatactctgaggacagggtcggtt 5379
Query: 207 ttcaacagatatgtttgcttctgggtcgcgaatcagtgagcggttttgacttttttattt 266
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5380 ttcaacagatatgtcggcttctgggtcgcgaatcagtgagcggttttgacttttttattt 5439
Query: 267 tcttttttcactttaggaattaatttccggtaatggattatatacaggcgttttaaggtt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5440 tcttttttcactttaggaattaatttccggtaatggattatatacaggcgttttaaggtt 5499
Query: 327 cctcgagaacctgctcaaattgaggaggaggagggaaaaagtcactgatgcgagtgatgc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5500 cctcgagaacctgctcaaattgaggaggaggagggaaaaagtcactgatgcgagtgatgc 5559
Query: 387 atcagcacatgtgaatagaaagccaatttgagccaaagaactactgaagaacgttcaatt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5560 atcagcacatgtgaatagaaagccaatttgagccaaagaactactgaagaacgttcaatt 5619
Query: 447 atttccttccttagatcgtacgaaataggaattaatggaagcttacttattttgcttgcc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5620 atttccttccttagatcgtacgaaataggaattaatggaagcttacttattttgcttgcc 5679
Query: 507 tttttcgagctactgtttcctaaatgcgcattgtatatacatcagagatgaccgcctttt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5680 tttttcgagctactgtttcctaaatgcgcattgtatatacatcagagatgaccgcctttt 5739
Query: 567 ttctttttgcaatacaccgggaaaaagcctcagtcgacactgaaatcgtacagcatacgt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5740 ttctttttgcaatacaccgggaaaaagcctcagtcgacactgaaatcgtacagcatacgt 5799
Query: 627 ggtccaaagggtgatactcctttaggctttgtcttntaggtccgctgattactatcattt 686
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 5800 ggtccaaagggtgatactcctttaggctttgtcttttaggtccgctgattactatca-tt 5858
Query: 687 cga-gaaaattatatattcgttcccggaatgattttctcagccggcatttcgattaaagt 745
||| |||||| ||||| ||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 5859 cgaggaaaatagtatatacgttcccggaatgattttctcagccggcattccgataaaagt 5918
Query: 746 caaaattaaataggaaggaggag 768
|| || || |||||| |||||||
Sbjct: 5919 cagaa-tagataggagggaggag 5940
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6666
Number of Sequences: 1807
Number of extensions: 6666
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)