BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZA03RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig812 955 0.0
3x_Contig1771 385 e-106
>3x_Contig812
Length = 2325
Score = 955 bits (482), Expect = 0.0
Identities = 497/502 (99%)
Strand = Plus / Plus
Query: 49 tgtgagaaaagatcgaaaattcgctgggagtacttgtatttgcattcgtcttcaaacccg 108
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1800 tgtgagaaaagatcgaaaatgcgctgggagtacttgtatttgcattcgtcttcaaacccg 1859
Query: 109 tacactttattcatgctgttggtttcatgattacctctgttcaagtaaatgttctgtgga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1860 tacactttattcatgctgttggtttcatgattacctctgttcaagtaaatgttctgtgga 1919
Query: 169 tacacgattttcaaagaatagaataaaatggccacttcacaagaccatgattctcggtct 228
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 1920 tacacgattttcaaagaatagaataaaatggccacttcacaagaccatgatccacggtct 1979
Query: 229 acgaaatcaccattgaataaatatacattggagccgcctactttcccataacttttgaag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1980 acgaaatcaccattgaataaatatacattggagccgcctactttcccataacttttgaag 2039
Query: 289 atgttcagaacatcataaaattgaccatgcgtgtcaccacatacagaaattcttgtatcc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2040 atgttcagaacatcataaaattgaccatgcgtgtcaccacatacagaaattcttgtatcc 2099
Query: 349 ggcttttctctgttatcaagttcaacaacactgttttcttgcttgaacaaatagtctgca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2100 ggcttttctctgttatcaagttcaacaacactgttttcttgcttgaacaaatagtctgca 2159
Query: 409 tgagaaatgatcgctgcaacgtaagcctttggaagctttttaccttctaggaaaatctca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2160 tgagaaatgatcgctgcaacgtaagcctttggaagctttttaccttctaggaaaatctca 2219
Query: 469 ttaatcatataagaaatgaattcctggttcatattgttaactctgacaccagcattggcc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2220 ttaatcatataagaaatgaattcctggttcatattgttaactctgacaccagcattggcc 2279
Query: 529 ccagaatctgacttcacttgtt 550
||||||||||| |||| |||||
Sbjct: 2280 ccagaatctgaattcaattgtt 2301
>3x_Contig1771
Length = 25932
Score = 385 bits (194), Expect = e-106
Identities = 241/252 (95%), Gaps = 4/252 (1%)
Strand = Plus / Plus
Query: 526 gccccagaatctgacttcacttgttcgaattccaaggttttaccatcatatntgaggaga 585
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 5 gccccagaatctgacttcacttgttcgaattccaaggtttacccatcatatttgaggaga 64
Query: 586 tcggcatttgcatcgaatgagctgatatttaaagtttgacatanatcaactttagaagag 645
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 65 tcggcatttgcatcgaatgagctgatatttaaagtttgacataaatcaactttagaagag 124
Query: 646 tct-caccgctaatagctttttcaaaattctccttctgtatgactttattacagattgct 704
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 125 tctccaccgctaatagctttttcaaaattctccttctgtatgactttatcacagattgct 184
Query: 705 aatgcattttttgcagtgagcttcgttagctttgaatttcaacacaatgaatcaagtgcc 764
||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| ||
Sbjct: 185 aatgcattttttgcagtgagc-tcgttaggcttgaatttcaacacaatg-atcaagt-cc 241
Query: 765 ttccttgccttt 776
||||||||||||
Sbjct: 242 ttccttgccttt 253
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8175
Number of Sequences: 1807
Number of extensions: 8175
Number of successful extensions: 82
Number of sequences better than 1.0e-20: 2
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)