BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZA04FM1.SCF screened BAC_end
(1171 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1760 527 e-149
>3x_Contig1760
Length = 27266
Score = 527 bits (266), Expect = e-149
Identities = 317/330 (96%), Gaps = 3/330 (0%)
Strand = Plus / Plus
Query: 125 ccccttccatagcaaatgctggggttcccacgctcttgcaatgctt-cgcggtacgatat 183
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 26926 ccccttccatagcaaatgctggggttcccacgctcttgcaatgctttcgcggtacgatat 26985
Query: 184 tatacaaaacacaactctgtatcacacgttgatgcgttgtcagcacattcttcggaactg 243
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 26986 tatacaaaacacaactctgtatcactcgttgatgcgttgtcagcacattctccggaactg 27045
Query: 244 tcatccgaaaacgtatttggctatatcacttctgttctcttcaaaatattacctaggaaa 303
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27046 tcatccgaaaacgtatc-ggctatatcacttctgttctcttcaaaatattacctaggaaa 27104
Query: 304 ttcaactcgttcacctgttaaatcacctaccgggaattaccttcttgaccataaaaataa 363
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 27105 ttcaactcgttcacctgttaaatcacctaccgggaattaccttcttgaccaaaaaaagaa 27164
Query: 364 tgtactaatggacaaactgcactgtttacaactcacttcatgctatttataacaactcat 423
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 27165 tgtactaatggacaaactgcactgtttacaactcacttcatgctatcgataacaactcat 27224
Query: 424 ctcatcttatcttattaagagattgcatgt 453
||||||| ||| || ||||||||||||||
Sbjct: 27225 ctcatctcatc-gataaagagattgcatgt 27253
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,507
Number of Sequences: 1807
Number of extensions: 18507
Number of successful extensions: 332
Number of sequences better than 1.0e-20: 1
length of query: 1171
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1155
effective length of database: 10,329,639
effective search space: 11930733045
effective search space used: 11930733045
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)