BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZA04RM1.SCF screened BAC_end
         (1036 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1142                                                         807   0.0  

>3x_Contig1142 
          Length = 5741

 Score =  807 bits (407), Expect = 0.0
 Identities = 479/499 (95%), Gaps = 3/499 (0%)
 Strand = Plus / Minus

                                                                       
Query: 105 tatccacttatgcattgtaatcatctttgctcaatgtgaatgggtgagagaaatcgatgg 164
           ||||||| |||| |||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 639 tatccacgtatgaattgtaatcatctttgatcaatgtgaatgggtaagagaaatcgatgg 580

                                                                       
Query: 165 tgaaactgaagaatttacccactggcaaatgctggttagcattcgaataatcatcttccg 224
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 579 tgaaactgaagaatttacccactggcaaatcctggttagcattcgaataatcatcttccg 520

                                                                       
Query: 225 tagtgacacctttataccttagaaattcatgttgaggtttattctctgcagagacgactt 284
           ||||||||||||||||||||||||||||||||||||| | |  ||||| |||||||||||
Sbjct: 519 tagtgacacctttataccttagaaattcatgttgaggctcaaactctgaagagacgactt 460

                                                                       
Query: 285 tgattctcaatttttcaagctgtgtcgctttcttcttacccccttcctctgtcttggatg 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgattctcaatttttcaagctgtgtcgctttcttcttacccccttcctctgtcttggatg 400

                                                                       
Query: 345 tgactttcttcttaaagatgatctcatcatcagtattgataatgttgtacagtgtgaata 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgactttcttcttaaagatgatctcatcatcagtattgataatgttgtacagtgtgaata 340

                                                                       
Query: 405 aatcttcaatatcctgaggttgaagagtcaaaatggctctttccccactgtgtgaaccgg 464
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aatcttctttatcctgaggttgaagagtcaaaatggctctttccccactgtgtgaaccgg 280

                                                                       
Query: 465 tcactttattgattaacctcattgcttcttttatccg-taacttgagacacctctgcggg 523
           |||||||||||||||||||||||||||| |||| ||| |||||||||||||||||  |||
Sbjct: 279 tcactttattgattaacctcattgcttc-tttacccgttaacttgagacacctctttggg 221

                                                                       
Query: 524 gactttctgtattaagtgctgtttcaataaattgctgtcaggtgtataaggtatgtcttt 583
            || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 220 tacgttctgtattaagtgctgtttcaataaattgctgtcaggtgtataaggtatg-cttt 162

                              
Query: 584 tgccaatacctctttattt 602
           |||||||||||||||||||
Sbjct: 161 tgccaatacctctttattt 143


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,385
Number of Sequences: 1807
Number of extensions: 12385
Number of successful extensions: 110
Number of sequences better than 1.0e-20: 1
length of query: 1036
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1020
effective length of database: 10,329,639
effective search space: 10536231780
effective search space used: 10536231780
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)