BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC27ZA04RM1.SCF screened BAC_end (1036 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1142 807 0.0 >3x_Contig1142 Length = 5741 Score = 807 bits (407), Expect = 0.0 Identities = 479/499 (95%), Gaps = 3/499 (0%) Strand = Plus / Minus Query: 105 tatccacttatgcattgtaatcatctttgctcaatgtgaatgggtgagagaaatcgatgg 164 ||||||| |||| |||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct: 639 tatccacgtatgaattgtaatcatctttgatcaatgtgaatgggtaagagaaatcgatgg 580 Query: 165 tgaaactgaagaatttacccactggcaaatgctggttagcattcgaataatcatcttccg 224 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 579 tgaaactgaagaatttacccactggcaaatcctggttagcattcgaataatcatcttccg 520 Query: 225 tagtgacacctttataccttagaaattcatgttgaggtttattctctgcagagacgactt 284 ||||||||||||||||||||||||||||||||||||| | | ||||| ||||||||||| Sbjct: 519 tagtgacacctttataccttagaaattcatgttgaggctcaaactctgaagagacgactt 460 Query: 285 tgattctcaatttttcaagctgtgtcgctttcttcttacccccttcctctgtcttggatg 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 459 tgattctcaatttttcaagctgtgtcgctttcttcttacccccttcctctgtcttggatg 400 Query: 345 tgactttcttcttaaagatgatctcatcatcagtattgataatgttgtacagtgtgaata 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 399 tgactttcttcttaaagatgatctcatcatcagtattgataatgttgtacagtgtgaata 340 Query: 405 aatcttcaatatcctgaggttgaagagtcaaaatggctctttccccactgtgtgaaccgg 464 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 339 aatcttctttatcctgaggttgaagagtcaaaatggctctttccccactgtgtgaaccgg 280 Query: 465 tcactttattgattaacctcattgcttcttttatccg-taacttgagacacctctgcggg 523 |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||| Sbjct: 279 tcactttattgattaacctcattgcttc-tttacccgttaacttgagacacctctttggg 221 Query: 524 gactttctgtattaagtgctgtttcaataaattgctgtcaggtgtataaggtatgtcttt 583 || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 220 tacgttctgtattaagtgctgtttcaataaattgctgtcaggtgtataaggtatg-cttt 162 Query: 584 tgccaatacctctttattt 602 ||||||||||||||||||| Sbjct: 161 tgccaatacctctttattt 143 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,385 Number of Sequences: 1807 Number of extensions: 12385 Number of successful extensions: 110 Number of sequences better than 1.0e-20: 1 length of query: 1036 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1020 effective length of database: 10,329,639 effective search space: 10536231780 effective search space used: 10536231780 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)