BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZA06FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1467 1281 0.0
>3x_Contig1467
Length = 7717
Score = 1281 bits (646), Expect = 0.0
Identities = 713/726 (98%), Gaps = 7/726 (0%)
Strand = Plus / Plus
Query: 88 tcaagaggggaaattaaatcaaagcagcaatatattgatcaatggtgcctctacaatgac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5754 tcaagaggggaaattaaatcaaagcagcaatatattgatcaatggtgcctctacaatgac 5813
Query: 148 cggaatatttgcactacaactcttaaagtttcattacaggatattgaacagaatcgtgtt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5814 cggaatatttgcactacaactcttaaagtttcattacaggatattgaacagaatcgtgtt 5873
Query: 208 aatctcatctacctccggtatgaacttcattaagtcaaatttgcctgaactagtcgatga 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5874 aatctcatctacctccggtatgaacttcattaagtcaaatttgcctgaactagtcgatga 5933
Query: 268 attgctcttcatcgactatgcagcaacgaacggtaaaatctacaaaccattaagcgatct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5934 attgctcttcatcgactatgcagcaacgaacggtaaaatctacaaaccattaagcgatct 5993
Query: 328 agtggcaagcaatgaattggttgaatataacaatgaaactggaaattttataactcaacc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5994 agtggcaagcaatgaattggttgaatataacaatgaaactggaaattttataactcaacc 6053
Query: 388 atttggccagggtagcttcaatttagttcttgactttattggagggtatgacattatcgg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6054 atttggccagggtagcttcaatttagttcttgactttattggagggtatgacattatcgg 6113
Query: 448 tcactcttcttccattttgtccaaagatgctacttacatcacaaccgttggcgataataa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6114 tcactcttcttccattttgtccaaagatgctacttacatcacaaccgttggcgataataa 6173
Query: 508 atcgaattacaagaaagatacttttaattcatggggtactgcaagttctaatattagaaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6174 atcgaattacaagaaagatacttttaattcatggggtactgcaagttctaatattagaaa 6233
Query: 568 gctgttcggacaggtgctatggtctttcgattatcaaatgttttattttgatccaaatgc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6234 gctgttcggacaggtgctatggtctttcgattatcaaatgttttattttgatccaaatgc 6293
Query: 628 caaattagcgacaaatgaatggcc-aaaaaatgtcatgagctaattagaaagtgaagttg 686
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 6294 caaattagcgacaaatgaatggccaaaaaaatgtcatgagctaa-tagaaagtgaagttg 6352
Query: 687 tcaagtttatttctgtagatagggtatttgatttggaaagaacatcaaaaagctattttc 746
||||||||||| ||||||||||||||| ||| |||||||||||||||||| || ||||||
Sbjct: 6353 tcaagtttattcctgtagatagggtatatga-ttggaaagaacatcaaaaggc-attttc 6410
Query: 747 ctatttgcagaacaggccgtgcacatggttaaagttgttttataagttagagaagttttg 806
|||| ||||| ||||||||||||||||| ||||||||||||| ||| |||||||||||||
Sbjct: 6411 ctatctgcag-acaggccgtgcacatgg-taaagttgtttta-aaggtagagaagttttg 6467
Query: 807 gacttt 812
|||||
Sbjct: 6468 aacttt 6473
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7792
Number of Sequences: 1807
Number of extensions: 7792
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)