BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZA07RM1.SCF screened BAC_end
         (950 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1779                                                         856   0.0  

>3x_Contig1779 
          Length = 24855

 Score =  856 bits (432), Expect = 0.0
 Identities = 521/548 (95%), Gaps = 2/548 (0%)
 Strand = Plus / Minus

                                                                        
Query: 78   cccatttcgataaatcggatatatcaatcatgtacacaaccggatcgacttgttggagac 137
            |||| |||| ||||||||||| |||||||||| |||| |   ||||||||||||||| ||
Sbjct: 8674 cccaattcgttaaatcggataaatcaatcatgaacactaaaagatcgacttgttggaaac 8615

                                                                        
Query: 138  atcgatcccagagtttttgcaagcgcggttggccgcctaaatcgtataccttgagattgg 197
            ||||||||||||||||||| ||||| | ||||||| |||||||||||||||| |||||||
Sbjct: 8614 atcgatcccagagtttttgaaagcgggtttggccggctaaatcgtatacctttagattgg 8555

                                                                        
Query: 198  tatggttcggcagctttacatctttgatgtttactcctaaagttggtatcgtgtcgacca 257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8554 tatggttcggcagctttacatctttgatgtttactcctaaagttggtatcgtgtcgacca 8495

                                                                        
Query: 258  caaactcctctccagctatcagattggtgaaagtcgttttacctgagttttgcaaaccaa 317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8494 caaactcctctccagctatcagattggtgaaagtcgttttacctgagttttgcaaaccaa 8435

                                                                        
Query: 318  caactgcaatgctcaattgtttctgagtgctcgcagtataaagccaatcccaaaattgat 377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8434 caactgcaatgctcaattgtttctgagtgctcgcagtataaagccaatcccaaaattgat 8375

                                                                        
Query: 378  tgaaccatttccagaagcaatccatacctactcaacagctcgagctatgaccgtttggtc 437
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8374 tgaaccatttccagaagcaatccatacctactcaacagctcgagctatgaccgtttggtc 8315

                                                                        
Query: 438  tgtttttccttctactttctcttggaattgtatcatttgtgatgtatcagttgtttaaat 497
            |||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct: 8314 tgtttttccttctactttctcttggaattgtagca-ttgcgatgtatcagttgtttaaat 8256

                                                                        
Query: 498  gtcaacatttatagtgaccctttacttttatagaataaccggctggaagggcaaaaacaa 557
            ||||||| | |||||||||||  |||| ||||||| ||||||||||||||||||||||| 
Sbjct: 8255 gtcaacaataatagtgaccctaaacttctatagaaaaaccggctggaagggcaaaaacag 8196

                                                                        
Query: 558  aacaagggataatagctgtcgaattgtatcttgtgctacatttaacgctggtacggtatt 617
            ||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 8195 aacaagggagaatagctgccgaattgtatcttgtgctaca-ttaacgctggtacggtatt 8137

                    
Query: 618  acatctac 625
            ||||||||
Sbjct: 8136 acatctac 8129


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,196
Number of Sequences: 1807
Number of extensions: 15196
Number of successful extensions: 152
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)