BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC27ZA07RM1.SCF screened BAC_end (950 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1779 856 0.0 >3x_Contig1779 Length = 24855 Score = 856 bits (432), Expect = 0.0 Identities = 521/548 (95%), Gaps = 2/548 (0%) Strand = Plus / Minus Query: 78 cccatttcgataaatcggatatatcaatcatgtacacaaccggatcgacttgttggagac 137 |||| |||| ||||||||||| |||||||||| |||| | ||||||||||||||| || Sbjct: 8674 cccaattcgttaaatcggataaatcaatcatgaacactaaaagatcgacttgttggaaac 8615 Query: 138 atcgatcccagagtttttgcaagcgcggttggccgcctaaatcgtataccttgagattgg 197 ||||||||||||||||||| ||||| | ||||||| |||||||||||||||| ||||||| Sbjct: 8614 atcgatcccagagtttttgaaagcgggtttggccggctaaatcgtatacctttagattgg 8555 Query: 198 tatggttcggcagctttacatctttgatgtttactcctaaagttggtatcgtgtcgacca 257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8554 tatggttcggcagctttacatctttgatgtttactcctaaagttggtatcgtgtcgacca 8495 Query: 258 caaactcctctccagctatcagattggtgaaagtcgttttacctgagttttgcaaaccaa 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8494 caaactcctctccagctatcagattggtgaaagtcgttttacctgagttttgcaaaccaa 8435 Query: 318 caactgcaatgctcaattgtttctgagtgctcgcagtataaagccaatcccaaaattgat 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8434 caactgcaatgctcaattgtttctgagtgctcgcagtataaagccaatcccaaaattgat 8375 Query: 378 tgaaccatttccagaagcaatccatacctactcaacagctcgagctatgaccgtttggtc 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8374 tgaaccatttccagaagcaatccatacctactcaacagctcgagctatgaccgtttggtc 8315 Query: 438 tgtttttccttctactttctcttggaattgtatcatttgtgatgtatcagttgtttaaat 497 |||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||| Sbjct: 8314 tgtttttccttctactttctcttggaattgtagca-ttgcgatgtatcagttgtttaaat 8256 Query: 498 gtcaacatttatagtgaccctttacttttatagaataaccggctggaagggcaaaaacaa 557 ||||||| | ||||||||||| |||| ||||||| ||||||||||||||||||||||| Sbjct: 8255 gtcaacaataatagtgaccctaaacttctatagaaaaaccggctggaagggcaaaaacag 8196 Query: 558 aacaagggataatagctgtcgaattgtatcttgtgctacatttaacgctggtacggtatt 617 ||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct: 8195 aacaagggagaatagctgccgaattgtatcttgtgctaca-ttaacgctggtacggtatt 8137 Query: 618 acatctac 625 |||||||| Sbjct: 8136 acatctac 8129 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,196 Number of Sequences: 1807 Number of extensions: 15196 Number of successful extensions: 152 Number of sequences better than 1.0e-20: 1 length of query: 950 length of database: 10,358,551 effective HSP length: 16 effective length of query: 934 effective length of database: 10,329,639 effective search space: 9647882826 effective search space used: 9647882826 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)