BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZA08FM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig982 1221 0.0
>3x_Contig982
Length = 3343
Score = 1221 bits (616), Expect = 0.0
Identities = 656/664 (98%), Gaps = 4/664 (0%)
Strand = Plus / Minus
Query: 86 attacgtattttttgatatattaaggtaaatgttacacagagacaatctattcttttact 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 attacgtattttttgatatattaaggtaaatgttacacagagacaatctattcttttact 957
Query: 146 tatagttagaaatcgcaatcggttatataaaagcacagggctaaatggtttagtgttcat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 tatagttagaaatcgcaatcggttatataaaagcacagggctaaatggtttagtgttcat 897
Query: 206 ttcaattcaacttgtcactgaacgtttaacatccagaatagagaactgattgttaattga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 ttcaattcaacttgtcactgaacgtttaacatccagaatagagaactgattgttaattga 837
Query: 266 gaaaaccaactcaagaaataaagcggggttaacaagggaacgacatgtttggttcgagaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 gaaaaccaactcaagaaataaagcggggttaacaagggaacgacatgtttggttcgagaa 777
Query: 326 agtcacattcttcgttgtctatctcgcaacagagattgctttcccactctatgagtgggt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 agtcacattcttcgttgtctatctcgcaacagagattgctttcccactctatgagtgggt 717
Query: 386 tatcgcttcaaaatgagcgtaaaatggtttactatgtaggtgttgacgttggtacaggat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tatcgcttcaaaatgagcgtaaaatggtttactatgtaggtgttgacgttggtacaggat 657
Query: 446 cagcgcgtgcctgtgtgatcgataatttggggaatattctttcgctagctgagaggccaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 cagcgcgtgcctgtgtgatcgataatttggggaatattctttcgctagctgagaggccaa 597
Query: 506 ttcaaaggcacgagttgaaaccaaactatatcactcaatcgtctcaagagatctggaatg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ttcaaaggcacgagttgaaaccaaactatatcactcaatcgtctcaagagatctggaatg 537
Query: 566 cgatctgttactgtgttaagaacgttgtcagagactctggcgtcgatcctagaactattc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cgatctgttactgtgttaagaacgttgtcagagactctggcgtcgatcctagaactattc 477
Query: 626 atgggattgggttcgacgcgactcgttcgttagtcgttgttgat-ataacaacgaggacg 684
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 476 atgggattgggttcgacgcgacttgttcgttagtcgttgttgataataacaacgaggacg 417
Query: 685 tcggggttggtcctgattttacctgaccacttaaaaaaatataatcttgtggattggatc 744
|||| |||||||||||||||| ||||| |||| | |||||||||||||||||| ||||||
Sbjct: 416 tcggtgttggtcctgatttta-ctgacaactt-acaaaatataatcttgtgga-tggatc 360
Query: 745 acag 748
||||
Sbjct: 359 acag 356
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6149
Number of Sequences: 1807
Number of extensions: 6149
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)