BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZA08RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1220 757 0.0
3x_Contig139 422 e-118
>3x_Contig1220
Length = 4729
Score = 757 bits (382), Expect = 0.0
Identities = 483/510 (94%), Gaps = 5/510 (0%)
Strand = Plus / Plus
Query: 285 aacctatagatacgctgtgcctagcacaaaatatgtgagtatctccaaaatgctaggcaa 344
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 14 aacctatagatacgctg-gcctagcacaaaatatgtgagtatccccaaaatgctaggcaa 72
Query: 345 atattgagcggtttttggaatctactttttcttttaatagagaaatcagtacccaaagtc 404
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 73 atattgagcggtttt-ggaatctacttttttttttaatagagaaatcagtacccaaagtc 131
Query: 405 atgtcaaaaaactgtgccttgcccacatttcttaaagacaggtagccatgaatcaagtgt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 atgtcaaaaaactgtgccttgcccacatttcttaaagacaggtagccatgaatcaagtgt 191
Query: 465 ccattccctttcttgctcatatagaggaactatattgaaggattgctaagacctaagaat 524
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 192 ccattccctttcttgctcatatagaggaactatattgaaggcatgctaagacctaagaat 251
Query: 525 ccaccaccgtaaactctccattctacatactaaaatcaaaggaaatttaaaagacaaaaa 584
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 252 ccaccaccgtaaaaactccattctacatactaaaatcaaaggaaattaaaaagacaaaaa 311
Query: 585 aaaaaacaccgaagggaaaacagtgtatgatcctttggcaaactccaagaacagcttaca 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 312 aaaaaacaccgaagggaaaacagtgtatgatcctttggcaaactccaagaacagctcaca 371
Query: 645 gcatgattttcccttaatcctgcaaaaaaagagaggaaaatgcgaagattcagtgggggc 704
|||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 372 gcatgattttccctaattcctgcaaaaaaagagaggaaaatgcgaagatccagtgggggc 431
Query: 705 cttaacaacggtgttctagttttttcttttgaccgcgattagtaaaat-ttataaatttc 763
| |||||||||||| | || || ||| |||||| |||||||||||||| ||| |||||
Sbjct: 432 cgtaacaacggtgtacgag-ttattcctttgacggcgattagtaaaatattagaaattct 490
Query: 764 tcccaaaaacatggatagttttgttttctt 793
| ||||||||||||||| |||||||||||
Sbjct: 491 acacaaaaacatggatag-tttgttttctt 519
>3x_Contig139
Length = 903
Score = 422 bits (213), Expect = e-118
Identities = 213/213 (100%)
Strand = Plus / Plus
Query: 47 cagaattaggaagaaggaagataggatgatgatataacaatttaaaggaaataatataac 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cagaattaggaagaaggaagataggatgatgatataacaatttaaaggaaataatataac 184
Query: 107 acaaaaacccttcttttgaaagacttgaatgtttgtaatgtaggtaactacgcagaatga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 acaaaaacccttcttttgaaagacttgaatgtttgtaatgtaggtaactacgcagaatga 244
Query: 167 atgaaaaacctaaccacgaaccgataaaggacgtaatgattaactggacccaaatcataa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atgaaaaacctaaccacgaaccgataaaggacgtaatgattaactggacccaaatcataa 304
Query: 227 aaagcatccacatatatatatatatatatatat 259
|||||||||||||||||||||||||||||||||
Sbjct: 305 aaagcatccacatatatatatatatatatatat 337
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,081
Number of Sequences: 1807
Number of extensions: 22081
Number of successful extensions: 3130
Number of sequences better than 1.0e-20: 2
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)