BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZA10FM1.SCF screened BAC_end
(1020 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1775 795 0.0
>3x_Contig1775
Length = 26320
Score = 795 bits (401), Expect = 0.0
Identities = 513/545 (94%), Gaps = 4/545 (0%)
Strand = Plus / Minus
Query: 117 ccgcagagaacaattcttacgccatcgcaacagaatcttaacaagacgtacgaagaaatt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23931 ccgcagagaacaattcttacgccatcgcaacagaatcttaacaagacgtacgaagaaatt 23872
Query: 177 aaaggattacctatggtctttactatgggaaaagtttgataaagattttagacaagagag 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23871 aaaggattacctatggtctttactatgggaaaagtttgataaagattttagacaagagag 23812
Query: 237 actaaagaggataaatatggatgacacaatagatatagatggcgagcagtttctacaaga 296
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23811 actaaagaggaaaaacatggatgacacaatagatatagatggcgagcagtttctacaaga 23752
Query: 297 agtcgactcatatgtgcttgggtatggcagaagttttaaacaatggattattccagtcga 356
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 23751 agtcgactcatatgtgcttgggtatggtagaagttttaaacaatggattattccagtcga 23692
Query: 357 cgaaagtgcgtatagttacaaagacgtggagacattagagttaccagcagacgtttgtgt 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 23691 cgaaagtgcgtatagttacaaagacgtggagacattagagttaccagcagacgtttgtat 23632
Query: 417 cacacaacaggatcttgacagtctgttcaaatttggtattccaacgaacaactatcaagt 476
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 23631 cacacaacaggatcttgacagtctgtccaaatttggtattccaacgaacaactatcaagt 23572
Query: 477 ttattctcaggatcggtatttggattgcaagagcggaaaacacggttttaactatttcaa 536
||||||||||| ||||||||||||||||||| |||||||||||| ||||| |||||||
Sbjct: 23571 cgattctcaggattggtatttggattgcaagagtggaaaacacggtattaacgatttcaa 23512
Query: 537 gattgttaaggaccaaaagatagtttgtttctgaaaaaagtcttatttgggtaacttttg 596
|| || ||||||||||||||||| || || ||||||||| | ||| |||| ||| ||||
Sbjct: 23511 gaaagtgaaggaccaaaagatagtatg-ttgtgaaaaaagccatatatggg-aac-tttg 23455
Query: 597 ggaggagcatgacccataacctatagccatccttttcacatggtcatgacctcttgttta 656
||||||||| ||||||| | |||||||||| |||||||||| ||||||| | |||| |
Sbjct: 23454 ggaggagcaggacccatcagtaatagccatcc-tttcacatggacatgaccacatgttaa 23396
Query: 657 caccc 661
|||||
Sbjct: 23395 caccc 23391
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7874
Number of Sequences: 1807
Number of extensions: 7874
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 1020
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1004
effective length of database: 10,329,639
effective search space: 10370957556
effective search space used: 10370957556
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)