BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZA10RM1.SCF screened BAC_end
(966 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig813 1189 0.0
>3x_Contig813
Length = 3136
Score = 1189 bits (600), Expect = 0.0
Identities = 652/664 (98%), Gaps = 4/664 (0%)
Strand = Plus / Plus
Query: 80 ctttcaaaaa-gaggaaagaagggaatacgctgaggggagtgcatcggaagcagcaaaat 138
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1623 ctttcaaaaatgaggaaagaagggaatacgctgaggggagtgcatcggaagcagcaaaat 1682
Query: 139 atgctataaacggcatactgcgcgcctcggtcgtacgcatacaaccatgatggtagcctc 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1683 atgctataaacggcatactgcgcgcctcggtcgtacgcatacaaccatgatggtagcctc 1742
Query: 199 ttctttccatactccagtacagatatgcacttactattgtattataaattacggatacca 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1743 ttctttccatactccagtacagatatgcacttactattgtattataaattacggatacca 1802
Query: 259 caaacaaaggctttttacttcctcagatgtaagagcagaatcaaaatgactggtaaaaac 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1803 caaacaaaggctttttacttcctcagatgtaagagcagaatcaaaatgactggtaaaaac 1862
Query: 319 tgaaaatatgaaaagataaaatcatagtatacctcgtggtaattatagtagtcgaatcat 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1863 tgaaaatatgaaaagataaaatcatagtatacctcgtggtaattatagtagtcgaatcat 1922
Query: 379 tggcaacaacatccaaaggcgcaacgtaaggaacaattcaagaaaagaaattctacacag 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1923 tggcaacaacatccaaaggcgcaacgtaaggaacaattcaagaaaagaaattctacacag 1982
Query: 439 atctataaaggtcgagcagaataaacagcgaaacaaaatagtagtgcacaagatacaaac 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1983 atctataaaggtcgagcagaataaacagcgaaacaaaatagtagtgcacaagatacaaac 2042
Query: 499 gacagaaacattctttccacatgacagatcaaaagaaacgctagttttatttgcacagta 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2043 gacagaaacattctttccacatgacagatcaaaagaaacgctagttttatttgcacagta 2102
Query: 559 tctatactgtgagaaaaaaaaaagattgcaaagtggatgatatcaataaaaccgttctta 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2103 tctatactgtgagaaaaaaaaaagattgcaaagtggatgatatcaataaaaccgttctta 2162
Query: 619 atttgcttctacgcaactaagaaaagaaaacctattgaaaacgattacacataaacagaa 678
| ||||||| ||||||||||||||||||||||||| ||||||| |||||| ||||||||
Sbjct: 2163 a-ttgcttcgacgcaactaagaaaagaaaacctatgaaaaacgagtacacaaaaacagaa 2221
Query: 679 aaaaaaaccta-taaaaaagtattgcactaaagaccgatctcttttcgattagctctatg 737
||||||||||| ||||||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct: 2222 aaaaaaacctagaaaaaaagta-tgcactaaagaccgatctcttctcgattagttctatg 2280
Query: 738 tttg 741
||||
Sbjct: 2281 tttg 2284
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,949
Number of Sequences: 1807
Number of extensions: 10949
Number of successful extensions: 110
Number of sequences better than 1.0e-20: 1
length of query: 966
length of database: 10,358,551
effective HSP length: 16
effective length of query: 950
effective length of database: 10,329,639
effective search space: 9813157050
effective search space used: 9813157050
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)