BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZA12FM1.SCF screened BAC_end
(1009 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig751 638 0.0
3x_Contig1174 234 3e-61
>3x_Contig751
Length = 2335
Score = 638 bits (322), Expect = 0.0
Identities = 364/378 (96%)
Strand = Plus / Minus
Query: 227 aagaatgatcgatagttataaaagataataggctctttgtctgctggttcactttgtttc 286
||||||||| ||||| ||| ||| |||||| ||||||| |||||| |||||||||||||
Sbjct: 2187 aagaatgatggataggtatgaaatataatacgctctttttctgctctttcactttgtttc 2128
Query: 287 ttctgattcacaacattttctttaactgcatcatagtttgagggtttatattgtccaatg 346
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 ttctaattcacagcattttctttaactgcatcatagtttgagggtttatattgtccaatg 2068
Query: 347 aagaggtctattagcagcaagtttgtttcattaggaattaaatctaatagttttcttgaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 aagaggtctattagcagcaagtttgtttcattaggaattaaatctaatagttttcttgaa 2008
Query: 407 aacttgatcaacacccttagagcatcatctactggtagacttttaatatagttcaaagca 466
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2007 aacttgatcaacacccttagagcatcatctactggtagactggtaatatagttcaaagca 1948
Query: 467 ccaaatgaatcttttttatgcaatagtacgatgctgacaacttggctaggatcctttgaa 526
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 ccaaatgaatctgttttatgcaatagtacgatgctgacaacttggctaggatcctttgaa 1888
Query: 527 tatttcaacacatacttttgcgctagctccaacatattgcattcgagcattaatcgaaga 586
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1887 tatttcaacacatacttttgcgctagctccaacatattgcattcgagcaataatcgaaga 1828
Query: 587 gcaatatccaaatcgaat 604
||||||||||||||||||
Sbjct: 1827 gcaatatccaaatcgaat 1810
>3x_Contig1174
Length = 6106
Score = 234 bits (118), Expect = 3e-61
Identities = 127/130 (97%)
Strand = Plus / Minus
Query: 85 cgaggaaaacgacaaattggaatggtttttgaacaaaagaggggaagatcaaactaggtt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 cgaggaaaacgacaaattggaatggtttttgaacaaaagaggggaagatcaaactaggtt 93
Query: 145 ttggtggatggtacgttggctgatctttttctactgttaatggtttgtcatcactggagg 204
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 92 ttggtggatggtacgttggctgagcgctttctactgttaatggtttgtcatcactggagg 33
Query: 205 cggaagatgg 214
||||||||||
Sbjct: 32 cggaagatgg 23
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6336
Number of Sequences: 1807
Number of extensions: 6336
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 2
length of query: 1009
length of database: 10,358,551
effective HSP length: 16
effective length of query: 993
effective length of database: 10,329,639
effective search space: 10257331527
effective search space used: 10257331527
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)