BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZA12RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig751 626 e-179
3x_Contig1174 283 3e-76
>3x_Contig751
Length = 2335
Score = 626 bits (316), Expect = e-179
Identities = 371/388 (95%), Gaps = 1/388 (0%)
Strand = Plus / Plus
Query: 48 attcgatttggatattgctcttcgattattgctcgaatgcaatatgttggagctagcgca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1810 attcgatttggatattgctcttcgattattgctcgaatgcaatatgttggagctagcgca 1869
Query: 108 aaagtatgtgttgaaatattcaaaggatcctagccaagttgtcagcatcgtactattgca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1870 aaagtatgtgttgaaatattcaaaggatcctagccaagttgtcagcatcgtactattgca 1929
Query: 168 taaaaaagattcatttggtgctttgaactatattaaaagtctaccagtattatgatgctc 227
||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 1930 taaaacagattcatttggtgctttgaactatattaccagtctaccagtag-atgatgctc 1988
Query: 228 taagggtgttgatcaagttttcaagaaaactattagatttaattcctaatgaaacaaact 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1989 taagggtgttgatcaagttttcaagaaaactattagatttaattcctaatgaaacaaact 2048
Query: 288 tgctgctaatagacctcttcattggacaatataaaccctcaaactatgatgcagttaaag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2049 tgctgctaatagacctcttcattggacaatataaaccctcaaactatgatgcagttaaag 2108
Query: 348 aaaatgttgtgaatcagaagaaacaaagtgaaccagcagacaaagagcctattatctttt 407
|||||| ||||||| ||||||||||||||||| |||||| ||||||| |||||| |||
Sbjct: 2109 aaaatgctgtgaattagaagaaacaaagtgaaagagcagaaaaagagcgtattatatttc 2168
Query: 408 ataactatcgatcattcttcgaatatat 435
||| ||||| ||||||||| |||||||
Sbjct: 2169 atacctatccatcattctttcaatatat 2196
>3x_Contig1174
Length = 6106
Score = 283 bits (143), Expect = 3e-76
Identities = 146/147 (99%)
Strand = Plus / Plus
Query: 423 tcttcgaatatatgttgccatcttccgcctccagtgatgacaaaccattaacagtagaaa 482
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tcttcgaatatattttgccatcttccgcctccagtgatgacaaaccattaacagtagaaa 65
Query: 483 gcgctcagccaacgtaccatccaccaaaacctagtttgatcttcccctcttttgttcaaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gcgctcagccaacgtaccatccaccaaaacctagtttgatcttcccctcttttgttcaaa 125
Query: 543 aaccattccaatttgtcgttttcctcg 569
|||||||||||||||||||||||||||
Sbjct: 126 aaccattccaatttgtcgttttcctcg 152
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,126
Number of Sequences: 1807
Number of extensions: 11126
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 2
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)