BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZB01RM1.SCF screened BAC_end
(1007 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1380 761 0.0
>3x_Contig1380
Length = 6718
Score = 761 bits (384), Expect = 0.0
Identities = 426/436 (97%), Gaps = 3/436 (0%)
Strand = Plus / Minus
Query: 48 tacacagaattcttccctcagcccaattcaggaatctacgacctcatcagacgcatctcc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5605 tacacagaattcttccctcagcccaattcaggaatctacgacctcatcagacgcatctcc 5546
Query: 108 caagatattataaacaggacatttaaaaagacaatctgtaatattacataccgtaccatc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5545 caagatattataaacaggacatttaaaaagacaatctgtaatattacataccgtaccatc 5486
Query: 168 tcatagccggatattaactaactagaataatatatatgttattgtgttagtgttgtatcc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5485 tcatagccggatattaactaactagaataatatatatgttattgtgttagtgttgtatcc 5426
Query: 228 cctgtattctctccatatatcttctctgcttttcaggagacattttattatggcgcagtg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5425 cctgtattctctccatatatcttctctgcttttcaggagacattttattatggcgcagtg 5366
Query: 288 cattcttttgtccattgagcaaaggtcgtgggagtggtggcaaggattttgacttagata 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5365 cattcttttgtccattgagcaaaggtcgtgggagtggtggcaaggattttgacttagata 5306
Query: 348 tagttcccggttcctttttattgtttgaagttagctcaagtatttaagcccttgagtt-t 406
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 5305 tagttcccggttcctttttattgtttgaagttagctcaagta-ttaagcccttgagttct 5247
Query: 407 tctgctgtctggtcgcataaataagcattttttgccgattttttttgagatcggagactt 466
||||||||||| |||||||||| |||| ||| |||||||||| |||||||||| ||| |
Sbjct: 5246 tctgctgtctgttcgcataaatcagcaatttctgccgattttctttgagatcgaggac-t 5188
Query: 467 tgcgaagcttaaggag 482
||||||||||||||||
Sbjct: 5187 tgcgaagcttaaggag 5172
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9255
Number of Sequences: 1807
Number of extensions: 9255
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 1007
length of database: 10,358,551
effective HSP length: 16
effective length of query: 991
effective length of database: 10,329,639
effective search space: 10236672249
effective search space used: 10236672249
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)