BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZB02RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig820 1334 0.0
>3x_Contig820
Length = 1802
Score = 1334 bits (673), Expect = 0.0
Identities = 708/716 (98%), Gaps = 3/716 (0%)
Strand = Plus / Minus
Query: 50 gcttgtctttaattctaattctttgcaactttaatgtgagtgggttaaatcccaacacat 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1142 gcttgtctttaattctaattctttgcaactttaatgtgagtgggttaaatcccaacacat 1083
Query: 110 atatccccgtgaaaaaatagaggaatgaattgataatcaaccatccaatgacagcaaatt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 atatccccgtgaaaaaatagaggaatgaattgataatcaaccatccaatgacagcaaatt 1023
Query: 170 tggcgatccaaagtacattattcagtagccatgtacaaacttcgacaatactgaatgnca 229
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct: 1022 tggcgatccaaagtacattattcagtagccatgtacaaacttcgacaataccgaaagtca 963
Query: 230 ttgcacaatgtcttttaagtgacaaaagatcaactggtctcagttgtaatcagcacaagc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 ttgcacaatgtcttttaagtgacaaaagatcaactggtctcagttgtaatcagcacaagc 903
Query: 290 ggttcaccttatttcttttaaaaacacagcaaccaattgaaaaaaaaaaaaattcacgag 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 ggttcaccttatttcttttaaaaacacagcaaccaattgaaaaaaaaaaaaattcacgag 843
Query: 350 gacccaaatataacactatgtattagcttagcactctcggtcaatcctgaagtgtttgtg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gacccaaatataacactatgtattagcttagcactctcggtcaatcctgaagtgtttgtg 783
Query: 410 aaagtgtgcatatatgattgttcctcaataaacgctgttaataattccaacttttcatac 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 aaagtgtgcatatatgattgttcctcaataaacgctgttaataattccaacttttcatac 723
Query: 470 atattttacctttaaaaaaaacaaattctcttgaagaagcatctaacagcaatataaatg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 atattttacctttaaaaaaaacaaattctcttgaagaagcatctaacagcaatataaatg 663
Query: 530 atattctgcaggatgatataatttaaggaacacatacggaactgcagggtatttacatga 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 atattctgcaggatgatataatttaaggaacacatacggaactgcagggtatttacatga 603
Query: 590 aatacagggaaatataagaattatgtggtgggggtgggtataaatgttggagatactgct 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aatacagggaaatataagaattatgtggtgggggtgggtataaatgttggagatactgct 543
Query: 650 atataatgctatattcatttgaagactattcaaacagaaatatttctgacccatttcccc 709
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atataatgctatatccatttgaagactattcaaacagaaatatttctgacccatttcccc 483
Query: 710 ctttcaaaattagaagaagccaagcattaaaaagctgtttgaacccaaatcaacct 765
||| ||||| |||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 482 cttccaaaa-tagaagaagccaagcatt-aaaagctgtttgaa-ccaaatcaacct 430
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,939
Number of Sequences: 1807
Number of extensions: 15939
Number of successful extensions: 225
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)