BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZB03FM1.SCF screened BAC_end
         (947 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1414                                                        1144   0.0  

>3x_Contig1414 
          Length = 7923

 Score = 1144 bits (577), Expect = 0.0
 Identities = 657/675 (97%), Gaps = 7/675 (1%)
 Strand = Plus / Minus

                                                                        
Query: 89   atatgagatattgaaggcatgcgatcttttagtgctccaggtaaagcccttctagcaggc 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6994 atatgagatattgaaggcatgcgatcttttagtgctccaggtaaagcccttctagcaggc 6935

                                                                        
Query: 149  ggttatttagttttgaaaccagaatatggatcttatgtcgtggcgctatcgtcaagaatg 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6934 ggttatttagttttgaaaccagaatatggatcttatgtcgtggcgctatcgtcaagaatg 6875

                                                                        
Query: 209  catgctgttgtttttta-gacgaattaattggtccatcatcgtcatcatcaataactgtt 267
            |||||||||||     | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6874 catgctgttgtcaagcaagacgaattaattggtccatcatcgtcatcatcaataactgtt 6815

                                                                        
Query: 268  aaagtcagaagtactcagtttaatgacgacgagtggcagtataagatggattcaagctcc 327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6814 aaagtcagaagtactcagtttaatgacgacgagtggcagtataagatggattcaagctcc 6755

                                                                        
Query: 328  aattacagcccacaagaattgcaagaaaacaagaatcccttcatcgaaaaggttttatca 387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6754 aattacagcccacaagaattgcaagaaaacaagaatcccttcatcgaaaaggttttatca 6695

                                                                        
Query: 388  acagtcttcaactactttcaacccgatttaaaactacaaggaaacatagtgatcgatatt 447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6694 acagtcttcaactactttcaacccgatttaaaactacaaggaaacatagtgatcgatatt 6635

                                                                        
Query: 448  tactcggatgctggctatcattcccaggcgggaacaaaactgagaagtaacggtgtgaaa 507
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6634 tactcggatgctggctatcattcccaggcgggaacaaaactgagaagtaacggtgtgaaa 6575

                                                                        
Query: 508  tctttcctttttcatagtaaatctatcactgaagtccccanaactgggttggggtcttca 567
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 6574 tctttcctttttcatagtaaatctatcactgaagtccccaaaactgggttggggtcttca 6515

                                                                        
Query: 568  gcgggattggttactgttntagtcacggcattggtttcctgcttc-aacaaaatcttgat 626
            |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 6514 gcgggattggttactgttttagtcacggcattggtttcctgcttcaaacaaaatcttgat 6455

                                                                        
Query: 627  gtttcatcaaaggatgatatgagattaattcacaatttgtctcaagtgggacatttgtca 686
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 6454 gtttcatcaaaggatgatatgagattaattcacaatttgtctcaagtggcaca-ttgtca 6396

                                                                        
Query: 687  ggcacaagggtaaaataggttgtggcttttgatgttgctgcagcagggtaccggaacctt 746
            ||||||| |||||||||||| ||||| ||||||||||||||||||| ||| ||||||| |
Sbjct: 6395 ggcacaa-ggtaaaataggtagtggc-tttgatgttgctgcagcagtgta-cggaaccat 6339

                           
Query: 747  cactttacaacagat 761
            ||| |||||||||||
Sbjct: 6338 cac-ttacaacagat 6325


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6424
Number of Sequences: 1807
Number of extensions: 6424
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)