BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZB03RM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1759 1366 0.0
>3x_Contig1759
Length = 25622
Score = 1366 bits (689), Expect = 0.0
Identities = 736/749 (98%), Gaps = 2/749 (0%)
Strand = Plus / Minus
Query: 51 gctttaagtaaggcagaacagcgtgagctaagaaaatcaaatcctggatttactgtcgaa 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6775 gctttaagtaaggcagaacagcgtgagctaagaaaatcaaatcctggatttactgtcgaa 6716
Query: 111 aagagagtatagaaaggatcataccagacaatataacaaacaaagcaatgtaccagaaac 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6715 aagagagtatagaaaggatcataccagacaatataacaaacaaagcaatgtaccagaaac 6656
Query: 171 atttaacagagaagaaactgggctcacaatgaacatcttctgttttacataaagattttg 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6655 atttaacagagaagaaactgggctcacaatgaacatcttctgttttacataaagaaaagg 6596
Query: 231 atattaggattttcatgtatatagagatcaaagaaatattaatcttattctaatgaggta 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6595 atattaggattttcatgtatatagagatcaaagaaatattaatcttattctaatgaggta 6536
Query: 291 tttgagagtatcatataccaaacgtctttatttagaagacaccggtgacttctctggtga 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6535 tttgagagtatcatataccaaacgtctttatttagaagacaccggtgacttctctggtga 6476
Query: 351 gaatattcctaggctgtttcacgtattcgtcgtcaccatcttcaccatattcatcatcgt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6475 gaatattcctaggctgtttcacgtattcgtcgtcaccatcttcaccatattcatcatcgt 6416
Query: 411 caaatgccaccgagaacgaatctacaattctgaagatatcatttttattcatagcttttc 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6415 caaatgccaccgagaacgaatctacaattctgaagatatcatttttattcatagcttttc 6356
Query: 471 catcaaaacttagttctatactgtcatttgccgaaaagaattgattttcttgagccagca 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6355 catcaaaacttagttctatactgtcatttgccgaaaagaattgattttcttgagccagca 6296
Query: 531 attgatcaactctattgtacaaatgttttgttttaggtctttgtggtaacctttgaacac 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6295 attgatcaactctattgtacaaatgttttgttttaggtctttgtggtaacctttgaacac 6236
Query: 591 tcatattctgggagatatatttgctcaaaacagctggtaaagcgtccaatgtggtatacc 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6235 tcatattctgggagatatatttgctcaaaacagctggtaaagcgtccaatgtggtataac 6176
Query: 651 cgaatctattgtcattacaaagtttgaatgcttcagctgattcatgggtttcgttgatca 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6175 cgaatctattgtcattacaaagtttgaatgcttcagctgattcatgggtttcgttgatca 6116
Query: 711 actttgttatcacggggagaaattcccatgtctgaattacttgatattgggaacatttat 770
||||||||||||| |||||||||| |||||||||| |||||||||||| ||||||| |||
Sbjct: 6115 actttgttatcac-gggagaaatttccatgtctgatttacttgatatt-ggaacatctat 6058
Query: 771 tttgtaaatgatcttaaaaccttgcattg 799
||||||||||||||| ||| ||||||||
Sbjct: 6057 cttgtaaatgatcttagaactttgcattg 6029
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7982
Number of Sequences: 1807
Number of extensions: 7982
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)