BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZB05FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1226 1019 0.0
3x_Contig755 218 2e-56
>3x_Contig1226
Length = 5066
Score = 1019 bits (514), Expect = 0.0
Identities = 564/577 (97%), Gaps = 3/577 (0%)
Strand = Plus / Plus
Query: 269 taataatcatacagagtcttctctgaatggccttttttgatgacatttcggaatttaaac 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taataatcatacagagtcttctctgaatggccttttttgatgacatttcggaatttaaac 60
Query: 329 tggaaacattcccaattttgtttttactcttgcttctcatcttaatgatcttctccaatt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggaaacattcccaattttgtttttactcttgcttctcatcttaatgatcttctccaatt 120
Query: 389 ccttgtttaactgcttttctgtgagcattcctccagatctataacgattctgattggaga 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccttgtttaactgcttttctgtgagcattcctccagatctataacgattctgattggaga 180
Query: 449 gaccttcaagaccattccatatccctaaaacgccttcgtagcctaaatctaagtctcctg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaccttcaagaccattccatatccctaaaacgccttcgtagcctaaatctaagtctcctg 240
Query: 509 aaaccattgttccgtcagctatggatgccttcgctatcgccatccatctccaagtattgc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaccattgttccgtcagctatggatgccttcgctatcgccatccatctccaagtattgc 300
Query: 569 gaatgtagatattgttattgaagttatcggatttatccatcatttcgacagttttcattg 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaatgtagatattgttattgaagttatcggatttatccatcatttcgacagttttcattg 360
Query: 629 gatcaagaccatatcccagactcgcgcgtttacgcattatanaacttatatcattctgta 688
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 361 gatcaagaccatatcccagactcgcgcgtttacgcattataaaacttatatcattctgta 420
Query: 689 acagctttttctgcctcgatgtaaaactcttttacgtcttcagaatcactcaggtaatcg 748
||||| || ||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 421 acagc-ttctctgcctcgatgtaaaactctttaacgtcttcagaatcactcaagtaatcg 479
Query: 749 ccggcatctttcatacttccggatgattttttttcattcagagttaatatcttc-agtca 807
||| |||||| |||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 480 ccgtcatcttccatacttccggatgattttttttcatccagagttaatatcttcaagtca 539
Query: 808 tctcctggatccaggtcttccgaagagcaagtttttt 844
||||||| |||||||||||| |||| ||||||||||
Sbjct: 540 tctcctgtatccaggtcttcgaaaga-caagtttttt 575
>3x_Contig755
Length = 2473
Score = 218 bits (110), Expect = 2e-56
Identities = 137/146 (93%)
Strand = Plus / Plus
Query: 88 taacctgcaatggccgcagcaatgagtctaagacgttctttatttgcagatcccaaaata 147
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 2305 taacctgcaatggccgcagcaatgagtctaagacgttcattatttgcacatcccaaaata 2364
Query: 148 gatatagctttctgaacgtcaccgaagaagacagcccaggcagcagctttctcatagtga 207
||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2365 catatagcattcacaaagtcaccgaagaagacagcccaggcagcagctttctcatagtga 2424
Query: 208 ttttgagctattagtgatttatattt 233
|||| |||||||||||||||| ||||
Sbjct: 2425 ttttcagctattagtgatttacattt 2450
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6584
Number of Sequences: 1807
Number of extensions: 6584
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 2
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)