BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZB05RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1688 1402 0.0
>3x_Contig1688
Length = 18058
Score = 1402 bits (707), Expect = 0.0
Identities = 755/763 (98%), Gaps = 6/763 (0%)
Strand = Plus / Minus
Query: 48 ctgcattt-aatacggttttaactgtgagatatctcattaccacgtctatttacagtttt 106
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6919 ctgcatttcaatacggttttaactgtgagatatctcattaccacgtctatttacagtttt 6860
Query: 107 tcctaactttacatttgcatgaaataatgcaaataatgtaaataaagaaatatcaaagat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6859 tcctaactttacatttgcatgaaataatgcaaataatgtaaataaagaaatatcaaagat 6800
Query: 167 aaacgtctgtctatagaaagagagaaccgaacgttatattgaagataaactgcaacaaat 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6799 aaacgtctgtctatagaaagagagaaccgaacgttatattgaagataaactgcaacaaat 6740
Query: 227 gtcttcgttacataactaatgagctttagctttgaggtgtctgtcatcgtaacaggactg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6739 gtcttcgttacataactaatgagctttagctttgaggtgtctgtcatcgtaacaggactg 6680
Query: 287 tcatctctaaaattgaagactcgtaatgattctctcgataatctaaatttactgttgaaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6679 tcatctctaaaattgaagactcgtaatgattctctcgataatctaaatttactgttgaaa 6620
Query: 347 acctcaccaactgaggttcccgtgaaagcg-ttctctcccatattggatgctattataac 405
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 6619 acctcaccaactgaggttcccgtgaaagcgcttctctcccatattggatgctattataac 6560
Query: 406 cattatagagtccgaaaagactagatatgaaaaaaccagattagagaatggcaaggatgc 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6559 cattatagagtccgaaaagactagatatgaaaaaaccagattagagaatggcaaggatgc 6500
Query: 466 taggatagaactatacgagaacagattgggctctgccgcttacactttaaggttgtttgt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6499 taggatagaactatacgagaacagattgggctctgccgcttacactttaaggttgtttgt 6440
Query: 526 ggaaagaaattgtgaaagattcaaacctaaacatatcaaactgttatctatgacgttatt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6439 ggaaagaaattgtgaaagattcaaacctaaacatatcaaactgttatctatgacgttatt 6380
Query: 586 tgaattgatgactagaccacgttcaagatcactgatcacatccgtggcagatcacctaac 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6379 tgaattgatgactagaccacgttcaagatcactgatcacatccgtggcagatcacctaac 6320
Query: 646 ttactctcttgtggctctatgtggttcccctgtttttcaatgcaattttgaattgcacca 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6319 ttactctcttgtggctctatgtggttcccctgtttttcaatgcaattttgaattgcacca 6260
Query: 706 atgaatttcactttcccatgatatcagcgatgcagtaacataccattcttgatgtttcat 765
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 6259 atggatttcactttcccatgatatcagcgatgcagtaacatacca-tcttgatgtttcat 6201
Query: 766 ataatggataaaaataatagcgaacccttcttcaaacattact 808
||||| ||| |||||||||||||| |||||| |||||||||||
Sbjct: 6200 ataat-gat-aaaataatagcgaa-ccttctccaaacattact 6161
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7185
Number of Sequences: 1807
Number of extensions: 7185
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)