BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZB06FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1315 1497 0.0
>3x_Contig1315
Length = 8846
Score = 1497 bits (755), Expect = 0.0
Identities = 796/807 (98%), Gaps = 2/807 (0%)
Strand = Plus / Minus
Query: 86 tgtgactagtctattttggacagattcttttgaatagtttactagcaagcacattacagc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1432 tgtgactagtctattttggacagattcttttgaatagtttactagcaagcacattacagc 1373
Query: 146 ctttgggacctgatcttcgatcatctctctaacaatggaaaagtatgagacgatcaatct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1372 ctttgggacctgatcttcgatcatctctctaacaatggaaaagtatgagacgatcaatct 1313
Query: 206 tctaattaattcacattccaactcttcacgttcggtaaattcggtagcagcttcagattt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1312 tctaattaattcacattccaactcttcacgttcggtaaattcggtagcagcttcagattt 1253
Query: 266 ggtatgggcatctgcgctcttgtctttaaaatcttgaatttgcaaattttcgatgtcata 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1252 ggtatgggcatctgcgctcttgtctttaaaatcttgaatttgcaaattttcgatgtcata 1193
Query: 326 agaattatcagagccgttataatcaattctcgaagaaagctttgtattggaactcttttg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1192 agaattatcagagccgttataatcaattctcgaagaaagctttgtattggaactcttttg 1133
Query: 386 ttctttgccgaagaaataattcaagaaggaatcctttgattgcttcatatcattttcttc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1132 ttctttgccgaagaaataattcaagaaggaatcctttgattgcttcatatcattttcttc 1073
Query: 446 ttcagagtcgtgctcgctggttgctgtggaatcagaatcaagcttcaaatcttgttctgt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 ttcagagtcgtgctcgctggttgctgtggaatcagaatcaagcttcaaatcttgttctgt 1013
Query: 506 ctcatctactgaatcggatttcttcatttcacgttcagcttgttgttgctctaacagtag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 ctcatctactgaatcggatttcttcatttcacgttcagcttgttgttgctctaacagtag 953
Query: 566 ctgcttctcatattccctctgtttctgaagtctttccgtttgctttttgttctttctagc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 ctgcttctcatattccctctgtttctgaagtctttccgtttgctttttgttctttctagc 893
Query: 626 ttcaacaatctcggccatggcctctgtagcacttgggaaatttggatgatttgtgttaat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 ttcaacaatctcggccatggcctctgtagcacttgggaaatttggatgatttgtgttaat 833
Query: 686 gtacgctttatgaatatcaatcaaactttcgacgtaagaacgagttggtcccaatctttt 745
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gtacgctttatgaatatcaatcaaactttcgacgtaagaacgagttggtcccaatctttc 773
Query: 746 cctcaacagttcactgacaacctcgactagcttactttgtagttttggatttcttgctag 805
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 772 cctcaacagttcactgacaacctcgactagcttactttgtagttttggatatcttgctag 713
Query: 806 ctcaggaga-ccccagttgggacatatcttcatcaattcttcatacaccaattttaccca 864
||||||||| || |||||| ||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 712 ctcaggagagccacagttgtgacatatcttcatcaattcttcatacaccaattctacgca 653
Query: 865 cggttgggatggatcta-aagtaatct 890
|||| |||||||||| |||||||||
Sbjct: 652 acgttgagatggatctagaagtaatct 626
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7898
Number of Sequences: 1807
Number of extensions: 7898
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)