BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZB06RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1469 1380 0.0
>3x_Contig1469
Length = 9240
Score = 1380 bits (696), Expect = 0.0
Identities = 752/768 (97%), Gaps = 2/768 (0%)
Strand = Plus / Minus
Query: 48 tctagtttggttaacatgttgagagaaaaagagctcttgcatgaacctggagaagcatct 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5647 tctagtttggttaacatgttgagagaaaaagagctcttgcatgaacctggagaagcatct 5588
Query: 108 attactaccttagctgccaaattagaacctgaatttgattcctccaagacagtgcaacta 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5587 attactaccttagctgccaaattagaacctgaatttgattcctccaagacagtgcaacta 5528
Query: 168 ccgtcatattcacttttacaggatattctaggtgatctagaggcgcaacttcttacgcaa 227
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 5527 ccgtcatattcacttttacaggatattctaggtgatctagaggcgcaacgccagacgcaa 5468
Query: 228 aacctagatattttgaacgcatctgtccttcagctttctcaacagtttgttcttaatgat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5467 aacctagatattttgaacgcatctgtccttcagctttctcaacagtttgttcttaatgat 5408
Query: 288 aaccatccaattacggaaaagttggtacatttcttatatcgggcaaaacctaataaatgt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5407 aaccatccaattacggaaaagttggtacatttcttatatcgggcaaaacctaataaatgt 5348
Query: 348 agtatatgtggtaagagatttggtaatactcttgaagaaaaggagttggaaatacaacat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5347 agtatatgtggtaagagatttggtaatactcttgaagaaaaggagttggaaatacaacat 5288
Query: 408 cttgattggcatttccgtgtcaacaagaagattaaaggtatccagtccaacaccactaca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5287 cttgattggcatttccgtgtcaacaagaagattaaaggtatccagtccaacaccactaca 5228
Query: 468 tctaccaaggtcattcaatccaggaattggtatttggatgaaaatcaatgggcagacttt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5227 tctaccaaggtcattcaatccaggaattggtatttggatgaaaatcaatgggcagacttt 5168
Query: 528 aaagaagaagacatcattgcaacagatattgatactggagctgctgaacagcaacctaca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5167 aaagaagaagacatcattgcaacagatattgatactggagctgctgaacagcaacctaca 5108
Query: 588 tttgcgaacaacagggaagattctactgatgcaatctatactaaactcaggaataaatat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5107 tttgcgaacaacagggaagattctactgatgcaatctatactaaactcaggaataaatat 5048
Query: 648 attgtagtaccggattatgccacagatatgaagttccagtgtcctatttgtaccgaaatc 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 5047 attgtagtaccggattatgccacagatatgaagttccagtgtcctatttgtaccgaatcc 4988
Query: 708 acatatggttaatatgatgaagatctgggagaatgggtttggagctactgcttacaggtt 767
||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||| |
Sbjct: 4987 acatatggtaaatatgatgaagatctgggagaatggatttggagcaactgcgtacagg-t 4929
Query: 768 gggagacaaattcttcaatcccacttgtttttattagggcagctaaaa 815
|||||||||||||||| || ||||||||| |||| | |||||||||||
Sbjct: 4928 gggagacaaattcttccatgccacttgttattatga-ggcagctaaaa 4882
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7639
Number of Sequences: 1807
Number of extensions: 7639
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)