BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZB07RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1259 1039 0.0
>3x_Contig1259
Length = 4915
Score = 1039 bits (524), Expect = 0.0
Identities = 586/600 (97%), Gaps = 5/600 (0%)
Strand = Plus / Minus
Query: 65 accatcgatgaagttagttcaatttcctctatgactaccactgatattcttcatactgca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2263 accatcgatgaagttagttcaatttcctctatgactaccactgatattcttcatactgca 2204
Query: 125 aaagccttagaaatattaagg-ttctatcgaggtcagcatgtactgtatttgaatagcga 183
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2203 aaagccttagaaatattaagggttctatcgaggtcagcatgtactgtatttgaatagcga 2144
Query: 184 tgtgatgaaaaggtacaaaaagctaaagaataataagaggagatctatagatcctcaaaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2143 tgtgatgaaaaggtacaaaaagctaaagaataataagaggagatctatagatcctcaaaa 2084
Query: 244 attaatctggacacccccagtatttaccgcttcacaattacgtttcgcatggtaaataat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2083 attaatctggacacccccagtatttaccgcttcacaattacgtttcgcatggtaaataat 2024
Query: 304 gcatcgtgaattgcggtctatgttattgtttgttaacgttatgttggtatatataagggt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2023 gcatcgtgaattgcggtctatgttattgtttgttaacgttatgttggtatatataagggt 1964
Query: 364 agttaagtttcggtatacgcatcatatgtaatattattcaatcaaaaggaaatagtctta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1963 agttaagtttcggtatacgcatcatatgtaatattattcaatcaaaaggaaatagtctta 1904
Query: 424 cgtctttattagccatttgagatgccgcaatcgcactatggactgcaataccgcaacaat 483
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1903 cgtctttattagccatttgagatgccgcaatcgcactagggactgcaataccgcaacaat 1844
Query: 484 ccgcccaagtactatgaccatgcgatccatcagtacagcatgaatcattctcatgatgat 543
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1843 ccgcccaagtactatgaccatgcgatccatcagtacagcatgaatcatcttcatgatgat 1784
Query: 544 cttgtgcgcgtgctgatggtttactaacgccctcgggacattttaagaaatattcccaaa 603
||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| |||
Sbjct: 1783 cttgtgcgcgtgctgatggttcactaacgccctcgggacatttcaagaaata-tccgaaa 1725
Query: 604 t-taaatgctgcatgattggtaatttttgttagaccctttgcctta-acatttttaccat 661
| |||||||||||||||||||||||||| |||| ||| ||||||| |||||||||||||
Sbjct: 1724 tagaaatgctgcatgattggtaatttttg-tagaacctctgccttatacatttttaccat 1666
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7450
Number of Sequences: 1807
Number of extensions: 7450
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)