BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZB08FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1303 1211 0.0
>3x_Contig1303
Length = 8112
Score = 1211 bits (611), Expect = 0.0
Identities = 708/727 (97%), Gaps = 10/727 (1%)
Strand = Plus / Minus
Query: 87 aatggatttcaaaatgtgtgtatttgagatatatctacatagtaataaataccgacacac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4706 aatggatttcaaaatgtgtgtatttgagatatatctacatagtaataaataccgacacac 4647
Query: 147 agatacacatcatataagaaaagacatctttaaatatggaataattgtgggaaagaatat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4646 agatacacatcatataagaaaagacatctttaaatatggaataattgtgggaaagaatat 4587
Query: 207 gtattgataaagtgaacaatttgtcaacgttacatttattcgtagatccaagacaattgg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4586 gtattgataaagtgaacaatttgtcaacgttacatttattcgtagatccaagacaattgg 4527
Query: 267 ttcaacttgtagtcaataagttcttccttcttgaaccacaagccgatttccttttcagca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4526 ttcaacttgtagtcaataagttcttccttcttgaaccacaagccgatttccttttcagca 4467
Query: 327 gattcaacagagtcagaaccgtgacagacatttctaccaacttcaatggcaaagtcacct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4466 gattcaacagagtcagaaccgtgacagacatttctaccaacttcaatggcaaagtcacct 4407
Query: 387 ctgatggtacctggagcagattgcaatgggttggtagcacccaagatagcacgaccttgc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4406 ctgatggtacctggagcagattgcaatgggttggtagcacccaagatagcacgaccttgc 4347
Query: 447 ttaacaacatccttaccttcccagacagtagctaaaactggaccagaagtcatgtaagac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4346 ttaacaacatccttaccttcccagacagtagctaaaactggaccagaagtcatgtaagac 4287
Query: 507 aatagagatgggaagaatggcttggaaaccaagtcagcgtagtgctccttcaacaaagct 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4286 aatagagatgggaagaatggcttggaaaccaagtcagcgtagtgctccttcaacaaagct 4227
Query: 567 ttggttggagtaaccaacttaataccaaccaatttgttacctctgtcttcaaaacgagct 626
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4226 tcggttggagtaaccaacttaataccaaccaatttgtaacctctgtcttcaaaacgagct 4167
Query: 627 aagatcttagagatcaaacctctttgaacaccatctggcttgatagcaaggaanagttct 686
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 4166 aagatcttagagatcaaacctctttgaacaccatctggcttgatagcaatgaa-agttct 4108
Query: 687 ttcagtgttagacacttttcttcgagttaagttaatacgtggattttgggttacgatccc 746
|||||||||||||| ||||| ||||||| ||||||||||| |||| || | |||||| ||
Sbjct: 4107 ttcagtgttagacatttttc-tcgagtt-agttaatacgt-gattctgtg-tacgat-cc 4053
Query: 747 tgttatggaacttagaattcaatggaacattaagcaatcgctaacccccagaagttgaaa 806
|| ||| ||||| |||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 4052 tgctat-gaactaagaa-tcaatggaaca-taagcaatcgctaa-ccccagaagttgaaa 3997
Query: 807 ttaagtg 813
| |||||
Sbjct: 3996 taaagtg 3990
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8175
Number of Sequences: 1807
Number of extensions: 8175
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)