BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZB08RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig821 1294 0.0
>3x_Contig821
Length = 3127
Score = 1294 bits (653), Expect = 0.0
Identities = 692/704 (98%), Gaps = 1/704 (0%)
Strand = Plus / Minus
Query: 49 tgcaacaggcttacagaaattgattggatttccagcccaatcgtcaatagtcaagaaaag 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2134 tgcaacaggcttacagaaattgattggatttccagcccaatcgtcaatagtcaagaaaag 2075
Query: 109 atgatgcgcggtgatagtagcggcgaccatgacatccaatggatccttgacatcagcatt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2074 atgatgcgcggtgatagtagcggcgaccatgacatccaatggatccttgacatcagcatt 2015
Query: 169 gatctcttcaatggtcttgatggcggcagcagtggtgcaatgttccaaaatgatcttcaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2014 gatctcttcaatggtcttgatggcggcagcagtggtgcaatgttccaaaatgatcttcaa 1955
Query: 229 ctttgggaaatcaaggtggagcttctttaaggcaggcaagaatgattcttcggcattcaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1954 ctttgggaaatcaaggtggagcttctttaaggcaggcaagaatgattcttcggcattcaa 1895
Query: 289 aacatgaatatcctctttttcaccagcgacacttggtttttcaccatgtaaattcaacac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1894 aacatgaatatcctctttttcaccagcgacacttggtttttcaccatgtaaattcaacac 1835
Query: 349 gatgccctcttcttccatggccttaaacaatggataaaacactgtgaaatcgttagggtc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1834 gatgccctcttcttccatggccttaaacaatggataaaacactgtgaaatcgttagggtc 1775
Query: 409 cacaccttgcgccgagttggtagtcacaccagcaggataacatttcacgccttgaatagc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1774 cacaccttgcgccgagttggtagtcacaccagcaggataacatttcacgccttgaatagc 1715
Query: 469 accaacttttgctgctgcatggatcaattcaggcgtcaaatctttgcagagatagaaaga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1714 accaacttttgctgctgcatggatcaattcaggcgtcaaatctttgcagagatagaaaga 1655
Query: 529 cattaaaaaagttgtttctggtgcaagagattccaaggtacatttatactcttggactct 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1654 cattaaaaaagttgtttctggtgcaagagattccaaggtacatttatactcttggactct 1595
Query: 589 tttccaggtaataaccggtgggcttaggtttggcatcacataagcaacagaaataccacc 648
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1594 ttccaaggtaataaccggtgggcttaggtttggcatcacataagcaacagaaataccacc 1535
Query: 649 tttctttacagtangagtgatcaatttgcacatttccccatttctcaaatggacgtgcat 708
|| ||| |||||| |||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 1534 ttccttcacagtaggagtgatcaatttgcacatttcgccatctctcaaatggacgtgcat 1475
Query: 709 tttacaagtgataccaagatcatatttctttttgagattcggac 752
| ||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 1474 atcacaagtgataccaagatcata-ttcagtttgagattcggac 1432
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7647
Number of Sequences: 1807
Number of extensions: 7647
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)