BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZB09RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1681 1088 0.0
>3x_Contig1681
Length = 11798
Score = 1088 bits (549), Expect = 0.0
Identities = 594/605 (98%), Gaps = 3/605 (0%)
Strand = Plus / Plus
Query: 50 cggttattggcggtgaaacggttcgaagtgctttgttccagaagctaccgctaagttacg 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5452 cggttattggcggtgaaacggttcgaagtgctttgttccagaagctaccgctaagttacg 5511
Query: 110 tatgtaacttatccatgagttgtagaacaagaacattatcttcggtggatgtttgtctga 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5512 tatgtaacttatccatgagttgtagaacaagaacattatcttcggtggatgtttgtctga 5571
Query: 170 acaagtaatcaagtctctgctttttgttaatggtgagaaattcatgatattctgggtcgt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5572 acaagtaatcaagtctctgctttttgttaatggtgagaaattcatgatattctgggtcgt 5631
Query: 230 ctacattgtagtgaacaattgatagtgagtccacttcggcaaataaaacatattttttcc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5632 ctacattgtagtgaacaattgatagtgagtccacttcggcaaataaaacatattttttcc 5691
Query: 290 catcgtgcgcaagaagctcaaaacagtctctttcacttcttatatcataattcgttacga 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5692 catcgtgcgcaagaagctcaaaacagtctctttcacttcttatatcataattcgttacga 5751
Query: 350 ggctcgggtgatcattttcgttacgtttgacgaatttgcctattatttcatttcttctaa 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5752 ggctcgggtgatcattttcgttacgtttgacgaatttgcctattatttcatttcttctaa 5811
Query: 410 gcggcaccgaatagggttcaaaaagatactgctgcaaagatgtagataggaaatcctctt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5812 gcggcaccgaatagggttcaaaaagatactgctgcaaagatgtagataggaaatcctctt 5871
Query: 470 tcgttctatctgtttttattgaatggaaattaatcgctaggtccataaggtaccaacgaa 529
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5872 tcgttctatctgtttttattgaatggaaattaatcgctaggtccatagggtaccaacgaa 5931
Query: 530 acatcgatcgccgaaattttctctctatgacattgaaatcatggccgtctaatatttttt 589
||||||||||||||||||||||||||||||||| ||| |||||| |||||||||| | ||
Sbjct: 5932 acatcgatcgccgaaattttctctctatgacatcgaagtcatgg-cgtctaatatctctt 5990
Query: 590 gtttcatacaattgacaaacctttcctaaatgtcccacaaaatgaatttttcttctggat 649
||||||||||||||||||||| ||||||||||||||| |||||| || |||| |||||||
Sbjct: 5991 gtttcatacaattgacaaacc-ttcctaaatgtcccaaaaaatg-atatttcatctggat 6048
Query: 650 caatt 654
|||||
Sbjct: 6049 caatt 6053
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8932
Number of Sequences: 1807
Number of extensions: 8932
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)