BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZB10FM1.SCF screened BAC_end
(996 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1360 926 0.0
>3x_Contig1360
Length = 8285
Score = 926 bits (467), Expect = 0.0
Identities = 507/515 (98%), Gaps = 4/515 (0%)
Strand = Plus / Minus
Query: 80 ttccttgactgaaaagattaaggttaagatagtttaaacattacaagatgacttcagaaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3968 ttccttgactgaaaagattaaggttaagatagtttaaacattacaagatgacttcagaaa 3909
Query: 140 taaaagaaaaagaacaatttgaaatcggcgtcgttggtgacactgagactggatccatcg 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3908 taaaagaaaaagaacaatttgaaatcggcgtcgttggtgacactgagactggatccatcg 3849
Query: 200 aggtttatgatggataaatcaaaaacgttaaatcacaacaattggaaggtactga-gcat 258
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3848 aggtttatgatggagaaatcaaaaacgttaaatcacaacaattggaaggtactgaagcat 3789
Query: 259 gctgttggccttgatctcttccaagaagttttggacagtgacttgaaatacgatgacaaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3788 gctgttggccttgatctcttccaagaagttttggacagtgacttgaaatacgatgacaaa 3729
Query: 319 gagtactccaaaatcagacgtaagattgatacctggttattaccagtgctttgtatcaca 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3728 gagtactccaaaatcagacgtaagattgatacctggttattaccagtgctttgtatcaca 3669
Query: 379 tacatgcttcagttcttggataagttatcgttgaattatgcttctgcatattccatgaag 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3668 tacatgcttcagttcttggataagttatcgttgaattatgcttctgcatattccatgaag 3609
Query: 439 gaggatcttggtcttgttgggaatgagtacggtaatattgccgctatcttcaatgtcggg 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3608 gaggatcttggtcttgttgggaatgagtacggtaatattgccgctatcttcaatgtcggg 3549
Query: 499 tatttgatcggttccattccagcaaactacgttattcaaaaactttcagtggtcaaattc 558
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
Sbjct: 3548 tatttgatcggttccattccagcaaactacgttattcaaaaacttccagtggccaaatac 3489
Query: 559 acagggtgtcgcccttatttcgtttgggcaatttt 593
||| ||||||| ||||| |||||||||||||||||
Sbjct: 3488 aca-ggtgtcg-cctta-ttcgtttgggcaatttt 3457
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9171
Number of Sequences: 1807
Number of extensions: 9171
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 996
length of database: 10,358,551
effective HSP length: 16
effective length of query: 980
effective length of database: 10,329,639
effective search space: 10123046220
effective search space used: 10123046220
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)