BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZB10RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1511 999 0.0
>3x_Contig1511
Length = 8569
Score = 999 bits (504), Expect = 0.0
Identities = 532/540 (98%), Gaps = 1/540 (0%)
Strand = Plus / Minus
Query: 49 tcctgtgtttcaggcaaacatagaaccacagaaaccgcagagagtggatttaggcccacg 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6288 tcctgtgtttcaggcaaacatagaaccacagaaaccgcagagagtggatttaggcccacg 6229
Query: 109 atgcagtctatagggagtctgtcctaatcccaaattcaaagatcttagatccgttatttg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6228 atgcagtctatagggagtctgtcctaatcccaaattcaaagatcttagatccgttatttg 6169
Query: 169 tattggatcgccattccccttacataagtttccttccagtaatgcatggaaatgtctgga 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6168 tattggatcgccattccccttacataagtttccttccagtaatgcatggaaatgtctgga 6109
Query: 229 gtaccaagacgctagacgtgtccgtgtccgtgtccgtgtccggttcaaagaaaaagtgtt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6108 gtaccaagacgctagacgtgtccgtgtccgtgtccgtgtccggttcaaagaaaaagtgtt 6049
Query: 289 tcatggcaaatatgaaagaaaagattcacagccaagacaccaaaagacaacaccatgttt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6048 tcatggcaaatatgaaagaaaagattcacagccaagacaccaaaagacaacaccatgttt 5989
Query: 349 cataccttgttagccatgtatggtacgatatgggaagacctatgttagtagaaagcaggt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5988 cataccttgttagccatgtatggtacgatatgggaagacctatgttagtagaaagcaggt 5929
Query: 409 accgtcaatcaacctgcttaacccataatcgtcatcctctaccagagatgcaaaaaaaaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5928 accgtcaatcaacctgcttaacccataatcgtcatcctctaccagagatgcaaaaaaaaa 5869
Query: 469 aatctactgcctgagggaatacactcacggggatggctgacacgtatgtaccgagttgct 528
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5868 aatctactgcctgagggaatacactcacggggatggctgacacgtaggtaccgagttgct 5809
Query: 529 accagtttcctcaagacagcacagattcggattggagaaggatccttccgtgatttgaaa 588
||||||| | |||||||||||||||||||||| |||| ||||| |||| ||||| |||||
Sbjct: 5808 accagttacatcaagacagcacagattcggataggag-aggatacttcagtgatatgaaa 5750
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,259
Number of Sequences: 1807
Number of extensions: 14259
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)