BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZB11FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1110 0.0
>3x_Contig1791
Length = 39945
Score = 1110 bits (560), Expect = 0.0
Identities = 610/624 (97%), Gaps = 2/624 (0%)
Strand = Plus / Minus
Query: 84 gccaaaactttttgattattggttaaataagaaactctcttcgatggaattggcttcgta 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20232 gccaaaactttttgattattggttaaataagaaactctcttcgatggaattggcttcgta 20173
Query: 144 tcgattatattcacttggatttggttccagaccaaatacaagcttcaagagtttaacgta 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20172 tcgattatattcacttggatttggttccagaccaaatacaagcttcaagagtttaacgta 20113
Query: 204 tatatcaagtttttcgttttgatatgagaccatttctattctttttattataccattgac 263
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20112 tatatcaagtctttcgttttgatatgagaccatttctattctttttattataccattgac 20053
Query: 264 atgatcgattaagtttgatctagtctttgttgataagggtaccgtgtcaaggtatatgtt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20052 atgatcgattaagtttgatctagtctttgttgataagggtaccgtgtcaaggtatatgtt 19993
Query: 324 aagctgtgagtgtagcgaataccatttcgacatattctgttcatggttacttttcagctt 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19992 aagctgtgagtgtagcgaataccatttcgacatattctgttcatggttacttttcagctt 19933
Query: 384 tagtattttatcttctactgatgtccttctttgtaccacaaatgtattacgcagtccggc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19932 tagtattttatcttctactgatgtccttctttgtaccacaaatgtattacgcagtccggc 19873
Query: 444 gatttctatttcacatccatcgatgctgccggagaaataaatagagtttttccaggctaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19872 gatttctatttcacatccatcgatgctgccggagaaataaatagagtttttccaggctaa 19813
Query: 504 tgcctctgttctattcctaaacattatatcacgtttttggctttgattcacaatggataa 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19812 tgcctctgttctattcctaaacattatatcacgtttttggctttgattcacaatggataa 19753
Query: 564 aacattggggtcagtattctttgttttcgttaagaatagggtgttacaattattccattt 623
||||||||||||||||||||| ||| ||||||||||||| |||||||| ||||||||||
Sbjct: 19752 aacattggggtcagtattcttgttttccgttaagaataggttgttacaa-tattccattt 19694
Query: 624 cgtacagcgaagaaagcggttgagataaataattattgtaatttgagggccttagttaat 683
|||||||||||||||||||||||||||||| | || |||||||||| || ||||||||||
Sbjct: 19693 cgtacagcgaagaaagcggttgagataaatcaataatgtaatttga-ggtcttagttaat 19635
Query: 684 tcatttaatttgatctttggatcc 707
|||| || || |||||||||||||
Sbjct: 19634 tcatctagttcgatctttggatcc 19611
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8465
Number of Sequences: 1807
Number of extensions: 8465
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)