BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZB11RM1.SCF screened BAC_end
         (947 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1049                                                        1168   0.0  

>3x_Contig1049 
          Length = 4107

 Score = 1168 bits (589), Expect = 0.0
 Identities = 624/633 (98%), Gaps = 2/633 (0%)
 Strand = Plus / Plus

                                                                        
Query: 47   cgccagcacctcaattaatgttggtacactggttgcaatgaaaaacttaccctttattct 106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2934 cgccagcacctcaattaatgttggtacactggttgcaatgaaaaacttaccctttattct 2993

                                                                        
Query: 107  atcagtaatttgattccaaatctcaaactcactagtagaaatatcgccatatctatcaga 166
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2994 atcagtaatttgattccaaatctcaaactcactagtagaaatatcgccatatctatcaga 3053

                                                                        
Query: 167  atgaaccattgaaagataaccaactgttaaagcactcaatgccaggtcccagacgaggct 226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3054 atgaaccattgaaagataaccaactgttaaagcactcaatgccaggtcccagacgaggct 3113

                                                                        
Query: 227  atcttcatatggtagcgaatcacctttgataaatgactggtaatcatgtttgatataggc 286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3114 atcttcatatggtagcgaatcacctttgataaatgactggtaatcatgtttgatataggc 3173

                                                                        
Query: 287  tttaaatctgccttttcgaactgggtttgtactcatcgttaatctctgaccaggattgat 346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3174 tttaaatctgccttttcgaactgggtttgtactcatcgttaatctctgaccaggattgat 3233

                                                                        
Query: 347  ctctacctagcaacaggatcccgtgaagtacactaaagattgatattgtttctagccaat 406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3234 ctctacctagcaacaggatcccgtgaagtacactaaagattgatattgtttctagccaat 3293

                                                                        
Query: 407  gaaaacaagcttgtttggatcgaatgtggtaagcatcagttcactttccaacgttaatcg 466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3294 gaaaacaagcttgtttggatcgaatgtggtaagcatcagttcactttccaacgttaatcg 3353

                                                                        
Query: 467  aggttcctttatttttgtatctaaggtggtcatatgaatctattattagttgaaatattt 526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3354 aggttcctttatttttgtatctaaggtggtcatatgaatctattattagttgaaatattt 3413

                                                                        
Query: 527  caaagtcagttcaaatgactgtcacgtgagagaaagatctattttagtttcgcagcacga 586
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3414 caaagtcagttcaaatgactgtcacgtgagagaatgatctattttagtttcgcagcacga 3473

                                                                        
Query: 587  tggatgccaccgtgaaccttcacgcatacacttgaagcaacttgggaagtttataagcca 646
            ||||||||||||||||||| ||||||||||||  ||||||| | ||||||| ||||||||
Sbjct: 3474 tggatgccaccgtgaacctccacgcatacactgaaagcaac-tcggaagttaataagcca 3532

                                             
Query: 647  ctatcggatccaatatattcatcaacaggtttg 679
            ||||| ||||||||| |||||||||||||||||
Sbjct: 3533 ctatc-gatccaatagattcatcaacaggtttg 3564


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7777
Number of Sequences: 1807
Number of extensions: 7777
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)