BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZB12RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig161 1072 0.0
3x_Contig809 143 7e-34
>3x_Contig161
Length = 858
Score = 1072 bits (541), Expect = 0.0
Identities = 574/585 (98%)
Strand = Plus / Minus
Query: 101 agggttcagaactaccaagtactgtagatctgaaggaactcgagttgattataaactaca 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 agggttcagaactaccaagtactgtagatctgaaggaactcgagttgattataaactaca 799
Query: 161 aatacaaacatgaagttacgcgatgcctttgaaaacgattatctgtattggtatggtttg 220
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 798 aatacaaacaggaagttacgcgatgcctttgaaaacgattatctgtattggtatggctgg 739
Query: 221 ttccgggaaaaccactttcatgcaaagattgaactcccatcttcatgcagctaaggagcc 280
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tgccgggaaaaccactttcatgcaaagattgaactcccatcttcatgcagctaaggagcc 679
Query: 281 accatatgtgattaatttggatccagcggtgttgaatgttccatacggtgcgaatataga 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 accatatgtgattaatttggatccagcggtgttgaatgttccatacggtgcgaatataga 619
Query: 341 tatccgtgattccatcaagtacaaaaaagtgatggagaattatgagttgggacctaacgg 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tatccgtgattccatcaagtacaaaaaagtgatggagaattatgagttgggacctaacgg 559
Query: 401 tgctattgtaacaagtctaaacttgttcagtacgaagatcgatcaagtgctcaaactagt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tgctattgtaacaagtctaaacttgttcagtacgaagatcgatcaagtgctcaaactagt 499
Query: 461 ggagaataaacaagacaaatacgagcattgtatcattgacacaccgggccagattgaatg 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggagaataaacaagacaaatacgagcattgtatcattgacacaccgggccagattgaatg 439
Query: 521 ttttgtgtggagcgcttcaggtcaaattattactgaatcctttgcttcaactttccctac 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttttgtgtggagcgcttcaggtcaaattattactgaatcctttgcttcaactttccctac 379
Query: 581 tgttattgcctatatcgttgacacaccaagaaacactttgccaacaacgtttatgagtaa 640
|||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||
Sbjct: 378 tgttattgcctatatcgttgacacaccaagaaacacctcgccaacaacgttcatgagtaa 319
Query: 641 catgttatatgcctgttcaattttgtacaagacttagctaccatt 685
||||||||||||||||||||| |||||||| ||| | ||||||||
Sbjct: 318 catgttatatgcctgttcaatattgtacaacactaacctaccatt 274
>3x_Contig809
Length = 3151
Score = 143 bits (72), Expect = 7e-34
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 44 gcttttgtcatctcatcgaatgattggtaaagatagagaatacaagagcaagggatcagg 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3076 gcttttgtcatctcatcgaatgagtggtaaagatagagaatacaagagcaagggatcagg 3135
Query: 104 gttcagaactaccaag 119
||||||||||||||||
Sbjct: 3136 gttcagaactaccaag 3151
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6953
Number of Sequences: 1807
Number of extensions: 6953
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 2
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)