BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZC01RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1710 1435 0.0
>3x_Contig1710
Length = 16151
Score = 1435 bits (724), Expect = 0.0
Identities = 791/811 (97%), Gaps = 2/811 (0%)
Strand = Plus / Minus
Query: 44 gctttcaattctcaactacattacatatctgccatcagctcatttcccatatctaaaatg 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13710 gctttcaattctcaactacattacatatctgccatcagctcatttcccatatctaaaatg 13651
Query: 104 atggaattactgccattatcaggaaacgaaacaatttacgaaagtgttaacgtactgtct 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13650 atggaattactgccattatcaggaaacgaaacaatttacgaaagtgttaacgtactgtct 13591
Query: 164 tctgtagatttaagtgatttgaatagatgcatccgttcattatatcaaagaatcatattc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13590 tctgtagatttaagtgatttgaatagatgcatccgttcattatatcaaagaatcatattc 13531
Query: 224 agccctcttcctaaacaaagcgatgccaataccgatgacagtaacaattccaataacgct 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13530 agccctcttcctaaacaaagcgatgccaataccgatgacagtaacaattccaataacgct 13471
Query: 284 aatatgcaaatggaaactggaaagattaagacagacagacattggatatgtatcgaggga 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13470 aatatgcaaatggaaactggaaagattaagacagacagacattggatatgtatcgaggga 13411
Query: 344 atacagaccatgttccagtactctcaactgaaagatccggtggaagcacacgcttcactg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13410 atacagaccatgttccagtactctcaactgaaagatccggtggaagcacacgcttcactg 13351
Query: 404 aatgatacgatgctccggcttcgtctgttacagaataagtgcccatcgatcgaaatacta 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13350 aatgatacgatgctccggcttcgtctgttacagaataagtgcccatcgatcgaaatacta 13291
Query: 464 ttcctactccccccgcatgaagccccagaattcatacaatcgctacaggagcatgatatt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13290 ttcctactccccccgcatgaagccccagaattcatacaatcgctacaggagcatgatatt 13231
Query: 524 tcaagaaataacatacctcatagacgacaagggaagagattcaagagagacaacacaggt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13230 tcaagaaataacatacctcatagacgacaagggaagagattcaagagagacaacacaggt 13171
Query: 584 attctcattggagactatatctgggagtactatatctagacagaagaatggcgcagtata 643
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 13170 attctcattggagactatatctggaagtactatatctagacagaagaatggcgcagtata 13111
Query: 644 tacgacatattcacagtatgataggggtagattattctgtgtagaacttctggaaacgct 703
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 13110 tacgacatattcacagtatgatagggtaagattattctgtgtagaacttctggaaacgct 13051
Query: 704 ttatgattacccngatttgaaagtatttgtttcctccttggactggttttcttgacaacc 763
|||||||||||| || |||||||||| |||||||||||||||||| ||| || ||| ||
Sbjct: 13050 ttatgattacccgga-ttgaaagtatctgtttcctccttggactgttttcctgaacaccc 12992
Query: 764 gaacacccgacaagttattcaaattcacgggaaactttattatttgtatgattcccggna 823
|||||||||||||||| |||||||||||| ||||| |||||||||||||||| |||| |
Sbjct: 12991 gaacacccgacaagtttatcaaattcacggaaaactatattatttgtatgattaccgg-a 12933
Query: 824 tattgcaaatttgtttttttgagaaatacag 854
||||||||| ||||||||| ||||| |||||
Sbjct: 12932 tattgcaaaattgttttttcgagaattacag 12902
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7054
Number of Sequences: 1807
Number of extensions: 7054
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)