BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZC02FM1.SCF screened BAC_end
(888 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig943 1471 0.0
>3x_Contig943
Length = 2708
Score = 1471 bits (742), Expect = 0.0
Identities = 794/806 (98%), Gaps = 4/806 (0%)
Strand = Plus / Plus
Query: 85 atgctttcagcttgaagaacactgtcggcgaatctggattcaaggagaaggttgatgctg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1776 atgctttcagcttgaagaacactgtcggcgaatctggattcaaggagaaggttgatgctg 1835
Query: 145 atgacgtctccaaactacaaactgctgtggaagaaactatcagctggttagatggatctc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1836 atgacgtctccaaactacaaactgctgtggaagaaactatcagctggttagatggatctc 1895
Query: 205 aagcagcttcctcatatgaatacaaggaaagacaaaaagaattggaggatgttgctaacc 264
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1896 aagcagcttccacagatgaatacaaggaaagacaaaaagaattggaggatgttgctaacc 1955
Query: 265 caatcatgaccaagttctacagcgctggcggtaccccagctggcggtgctccaggtggtg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1956 caatcatgaccaagttctacagcgctggcggtaccccagctggcggtgctccaggtggtg 2015
Query: 325 ccccaggtggcttcccaggtgctccaggcggtggtgctgctccaggtggcggtgattccg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2016 ccccaggtggcttcccaggtgctccaggcggtggtgctgctccaggtggcggtgattccg 2075
Query: 385 gtcctactgtcgaagaagttgattaaacgtgacgagattgattattctctcatcccatac 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2076 gtcctactgtcgaagaagttgattaaacgtgacgagattgattattctctcatcccatac 2135
Query: 445 ctcacaattaacgattaacgtcttttctcattcatcatacattgccaatcttattttttt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2136 ctcacaattaacgattaacgtcttttctcattcatcatacattgccaatcttattttttt 2195
Query: 505 ttattcatttcggtagactgataaaggcttcaattgatgggatctaattaattattaatt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2196 ttattcatttcggtagactgataaaggcttcaattgatgggatctaattaattattaatt 2255
Query: 565 aaatcactcatgcgatctagtactctctacaattcgtgtacaaaagtccttgtacaccat 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2256 aaatcactcatgcgatctagtactctctacaattcgtgtacaaaagtccttgtacaccat 2315
Query: 625 ggtttatacatacatatacaaaggttactaaatatcataaattatcatcatttattaaag 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2316 ggtttatacatacatatacaaaggttactaaatatcataaattatcatcatttattaaag 2375
Query: 685 atttcaaccacgttcaagcttcactcatcgcagcgtcgatttggcgagaggtgagatgtt 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2376 atttcaaccacgttcaagcttcactcatcgcagcgtcgatttggcgagaggtgagatgtt 2435
Query: 745 ggcacatttgtagattctttatttcacagaat-catcgtcattcgctgcggcaggacaga 803
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 2436 ggcacatttgtagattctttatttcacagaatccatcgtcatccgctgcggcaggacaga 2495
Query: 804 gtgacggattttactttaaga-aattttgat-tcatgtg-cagccagacatattacgttt 860
||||||||||| ||||||||| ||||||||| ||||||| |||| |||||||| ||||||
Sbjct: 2496 gtgacggatttgactttaagataattttgatatcatgtgacagcaagacatatcacgttt 2555
Query: 861 gacgacttttatattttttgaaaaat 886
||||||||| ||| ||||||||||||
Sbjct: 2556 gacgactttgataatttttgaaaaat 2581
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7306
Number of Sequences: 1807
Number of extensions: 7306
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 888
length of database: 10,358,551
effective HSP length: 16
effective length of query: 872
effective length of database: 10,329,639
effective search space: 9007445208
effective search space used: 9007445208
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)