BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZC02RM1.SCF screened BAC_end
         (895 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1340                                                        1104   0.0  

>3x_Contig1340 
          Length = 7156

 Score = 1104 bits (557), Expect = 0.0
 Identities = 578/584 (98%), Gaps = 1/584 (0%)
 Strand = Plus / Minus

                                                                       
Query: 46  gctttaccttggaatgctgaatgtcatctgtactgaattgtgccggcttgtaattttttg 105
           ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 584 gctttaccttggaatgctgaagggcatctgtactgaattgtgccggcttgtaattttttg 525

                                                                       
Query: 106 gaagcgaggtacattcatcacgaggatcatcatccatttccataccatcaggcacatacc 165
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaagcgaggtacattcatcacgaggatcatcatccatttccataccatcaggcacatacc 465

                                                                       
Query: 166 ttaaatcatagacattggctgtagattcatattctgtgccatcacagttttga-atantg 224
           |||||||| |||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct: 464 ttaaatcaaagacattggctgtagattcatattctgtgccatcacagttttgatagattg 405

                                                                       
Query: 225 attcggctgtcctaatgtcgctgcagtaaaccacggcataatagtatcttagacgttcca 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 attcggctgtcctaatgtcgctgcagtaaaccacggcataatagtatcttagacgttcca 345

                                                                       
Query: 285 attggtaacgacgaagtgctttagaatcatagtcctctgcgtctccttcctcataaattg 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 attggtaacgacgaagtgctttagaatcatagtcctctgcgtctccttcctcataaattg 285

                                                                       
Query: 345 attcgacattaatctcatcatcatctttatcattcttcttggatttctttgactggaata 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 attcgacattaatctcatcatcatctttatcattcttcttggatttctttgactggaata 225

                                                                       
Query: 405 attcttttggaggaccttcgatctcttcacgttgcatcctttctttaccaaattcacttg 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 attcttttggaggaccttcgatctcttcacgttgcatcctttctttaccaaattcacttg 165

                                                                       
Query: 465 gatatatggcaattttttgaatctctcctcccttaggcacgaaagacttaaatgtgacaa 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 gatatatggcaattttttgaatctctcctcccttaggcacgaaagacttaaatgtgacaa 105

                                                                       
Query: 525 acaaatcagcagatttgacatgatcccaatccaggttcactacagccaacgtatttgtgg 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 acaaatcagcagatttgacatgatcccaatccaggttcactacagccaacgtatttgtgg 45

                                                       
Query: 585 catttccactagcaggtttggactcttctagttcgatttcttct 628
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  catttccactagcaggtttggactcttctagttcgatttcttct 1


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7678
Number of Sequences: 1807
Number of extensions: 7678
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)