BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZC03FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1394 1267 0.0
>3x_Contig1394
Length = 5721
Score = 1267 bits (639), Expect = 0.0
Identities = 684/694 (98%), Gaps = 4/694 (0%)
Strand = Plus / Minus
Query: 84 taccgttccaacactgacgaaaagtacttgtgtacttggggtattgacagtgcctacgtc 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 taccgttccaacactgacgaaaagtacttgtgtacttggggtattgacagtgcctacgtc 797
Query: 144 gttaacgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactgaaaac 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gttaacgaattgtctgacgtcgtctccatctgtagaaccgattacccaggtactgaaaac 737
Query: 204 atggttatccctactattgtcaacggtggtagcaagttaccattgaccgttgtcgaccag 263
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 atggttatcccaactattgtcaacggtggtagcaagttaccattgaccgttgtcgaccag 677
Query: 264 gatacatactacacatggcaaggaatgaagacatcggctcaatactacgttaacaatgct 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gatacatactacacatggcaaggaatgaagacatcggctcaatactacgttaacaatgct 617
Query: 324 ggtgtttctaaggaggatggttgtgtctggggtacttctgggtctggtattggtaactgg 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggtgtttctaaggaggatggttgtgtctggggtacttctgggtctggtattggtaactgg 557
Query: 384 gctccattgaacttcggtgctggtgccactggcggtatctcttatctgtctttgattcca 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gctccattgaacttcggtgctggtgccactggcggtatctcttatctgtctttgattcca 497
Query: 444 aacccaaacaaccgtgaagcagccaacttcaacgtcaagattgttgcagctgacggtggt 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aacccaaacaaccgtgaagcagccaacttcaacgtcaagattgttgcagctgacggtggt 437
Query: 504 agcgtcatcggagaatgtgtttacgaaaacggttcctacaacggtggtagcgatggttgt 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agcgtcatcggagaatgtgtttacgaaaacggttcctacaacggtggtagcgatggttgt 377
Query: 564 accgtttcagtgacttctggtgctgctaatttcgttttatacgattaatgactcttttca 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 accgtttcagtgacttctggtgctgctaatttcgttttatacgattaatgactcttttca 317
Query: 624 gaggcattggcgggatgttatttaccgttgctgtntttcttttctttcctagtctgctat 683
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 316 gaggcattggcgggatgttatttaccgttgctgtttttcttttcttccctagtctgctat 257
Query: 684 ctgaatcctctgtatctgtcaaaaattgaaaatggaactaacatcattaatgggtgtcat 743
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 256 ctgaatcctctgtatctgtcaaaaattg-aaatggaactaacatcattaat-ggtgtca- 200
Query: 744 tgttgggcgtgggggcattatttttgtgagtact 777
||||| ||||| | ||| ||||||||||||||||
Sbjct: 199 tgttgtgcgtgtgtgca-tatttttgtgagtact 167
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5561
Number of Sequences: 1807
Number of extensions: 5561
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)