BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZC03RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1320 1378 0.0
>3x_Contig1320
Length = 7350
Score = 1378 bits (695), Expect = 0.0
Identities = 805/834 (96%), Gaps = 6/834 (0%)
Strand = Plus / Minus
Query: 48 ctgaaatcttcaccgatatctacgaagataagatctccaagtcccaaaacgcagaagtta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3179 ctgaaatcttcaccgatatctacgaagataagatctccaagtcccaaaacgcagaagtta 3120
Query: 108 tctttagaaactacagattacaagtgaaatctcacatcacatcatcatacccggaactag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3119 tctttagaaactacagattacaagtgaaatctcacatcacatcatcatacccggaactag 3060
Query: 168 cggagtggctaggtactgttggtagaatgaagttcgtccgtccaggataccgtttattga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3059 cggagtggctaggtactgttggtagaatgaagttcgtccgtccaggataccgtttattga 3000
Query: 228 acgaagtggatcgtgagttggctatcaaaacgttccacagattcagagactcatatcatc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2999 acgaagtggatcgtgagttggctatcaaaacgttccacagattcagagactcatatcatc 2940
Query: 288 ccatctgcaaatctctcgtaaagcaagatttgggcatctaaatttccctgaattctatcc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2939 ccatctgcaaatctctcgtaaagcaagatttgggcatctaaatttccctgaattctatcc 2880
Query: 348 ataggtgtgtcatcagtattatttaaaaaaactaaagttacactttcatacctctctcat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2879 ataggtgtgtcatcagtattatttaaaaaaactaaagttacactttcatacctctctcat 2820
Query: 408 caatatatcgccattcaaggctgtagttcttttatattccttttcacgtgacttctcctt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2819 caatatatcgccattcaaggctgtagttcttttatattccttttcacgtgacttctcctt 2760
Query: 468 tttgtaccaagaatttctgcttatgtgttgtcatctttgaaaaaaaagtttgaatctgga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2759 tttgtaccaagaatttctgcttatgtgttgtcatctttgaaaaaaaagtttgaatctgga 2700
Query: 528 ttttcgcattaaatcacatatggagatcattgaaaagaagtctaacatgttaaattgaaa 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2699 ttttcgcattaaatcacatatggagatcattgaaaagaagtctaacatgttaaattgaaa 2640
Query: 588 agagttttggactgtaacagcagcagatcgagtgtgaaaatacccaagcttggcgaccat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2639 agagttttggactgtaacagcagcagatcgagtgtgaaaatacccaagcttggcgaccat 2580
Query: 648 gaacaactttgctcagttatccgtatgtttggtttttttcttttatgttttggcggtagn 707
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 2579 gaacaactttgctcagttatccgtatgttt-gtttttttcttttatgttttggc-gtaag 2522
Query: 708 ttttgatcacacgtttaacaattttgttttaagggttttagacaatggaaatatattatt 767
||||||||||||||| |||| ||||| ||||||||||| |||||||| || |||| |||
Sbjct: 2521 ttttgatcacacgttaaacatttttg-tttaagggtttaagacaatgaaataatataatt 2463
Query: 768 cattgtatggtattttaaagttggcat-ttcaccattcctaccgtgttcattttgaaatg 826
||||||||| |||||| |||||||||| |||| ||| | || || ||||| ||||||||
Sbjct: 2462 cattgtatgttatttt-aagttggcatattcagcatactaacagttttcatcttgaaatg 2404
Query: 827 gaatcttttctcttttac-aatctccagttttgcgcaaaccttgtctttggaac 879
||||||| ||||||| | |||||||||||||||||| | ||||||| ||||||
Sbjct: 2403 gaatcttctctctttagcaaatctccagttttgcgcagaacttgtctgtggaac 2350
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8688
Number of Sequences: 1807
Number of extensions: 8688
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)