BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC27ZC05RM1.SCF screened BAC_end
         (921 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig837                                                         1203   0.0  

>3x_Contig837 
          Length = 3290

 Score = 1203 bits (607), Expect = 0.0
 Identities = 668/679 (98%), Gaps = 7/679 (1%)
 Strand = Plus / Minus

                                                                        
Query: 48   ttatttagtagcggcactgaaatacgttctcttccatcttcactggaaggcagtttccaa 107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1916 ttatttagtagcggcactgaaatacgttctcttccatcttcactggaaggcagtttccaa 1857

                                                                        
Query: 108  gtgaaaattaccattctcatccttggcgaacactcctttctcagttataataccatcgat 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1856 gtgaaaattaccattctcatccttggcgaacactcctttctcagttataataccatcgat 1797

                                                                        
Query: 168  gtgagtatatggagtgatatcaaatgatggattccatactggcatatctaaaggtgtaat 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1796 gtgagtatatggagtgatatcaaatgatggattccatactggcatatctaaaggtgtaat 1737

                                                                        
Query: 228  tccaactttggccttcacgggagtcttggattcgttcaataccggagttgggtcagttcc 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1736 tccaactttggccttcacgggagtcttggattcgttcaataccggagttgggtcagttcc 1677

                                                                        
Query: 288  gtcgattagagtaccttgaacaaatctgaactcatttggaggtctttcctcaaccactat 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1676 gtcgattagagtaccttgaacaaatctgaactcatttggaggtctttcctcaaccactat 1617

                                                                        
Query: 348  cttgtccccagtttctgtattgctatcaaaagtagtagttggtgcgacaacgtaaaactt 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1616 cttgtccccagtttctgtattgctatcaaaagtagtagttggtgcgacaacgtaaaactt 1557

                                                                        
Query: 408  gatcccaaagtgtctacagacgattgacaattggtaagtaccaatcttattggccgtgtc 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1556 gatcccaaagtgtctacagacgattgacaattggtaagtaccaatcttattggccgtgtc 1497

                                                                        
Query: 468  accattcttaactattctatcagcaccaacgaatgcagctttgataggtatctttgatgt 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1496 accattcttaactattctatcagcaccaacgaatgcagctttgataggtatctttgatgt 1437

                                                                        
Query: 528  ggatactaggtatgaaatggatgagtctgtaatcaacgtggatggaatttcatcatgtaa 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1436 ggatactaggtatgaaatggatgagtctgtaatcaacgtggatggaatttcatcatgtaa 1377

                                                                        
Query: 588  catttcgtatgcagttaagcgggatcccttggtttgaaggacgtgtttccaatgggaata 647
            || ||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||
Sbjct: 1376 caattcgtatgcagttaagcgggatccc-tggttgtaaggacgtgtttccaatgggaata 1318

                                                                        
Query: 648  cacgaaccatttttggcatttccaagtctttcgtcctcttttggttgttcatccccgctt 707
            ||||||||| |||||||| ||| ||||| ||||||||| ||||||||||||||||||| |
Sbjct: 1317 cacgaacca-ttttggca-ttcgaagtc-ttcgtcctc-tttggttgttcatccccgc-t 1263

                               
Query: 708  gatttgctttctttgttct 726
            ||||||| |||||||||||
Sbjct: 1262 gatttgc-ttctttgttct 1245


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8724
Number of Sequences: 1807
Number of extensions: 8724
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)