BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZC06FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1663 1209 0.0
>3x_Contig1663
Length = 13533
Score = 1209 bits (610), Expect = 0.0
Identities = 725/753 (96%), Gaps = 9/753 (1%)
Strand = Plus / Minus
Query: 87 tccaatggtgggtaaagccttgatcgctgagctagtgaaaatgggtcatactcccaagga 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5696 tccaatggtgggtaaagccttgatcgctgagctagtgaaaatgggtcatactcccaagga 5637
Query: 147 aatgccttcaagatcggtggttaatgggatttgtagagtcaatgcagagtggcatgctgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5636 aatgccttcaagatcggtggttaatgggatttgtagagtcaatgcagagtggcatgctgt 5577
Query: 207 tagtgattattgtctcaaaaggggcattgctgcagcgatgtgagtaaccagttggtccct 266
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5576 tagtgattattggcgcaaaaggggcattgctgcagcgatgtgagtaaccagttggtccct 5517
Query: 267 gtatcctgatttttgcatgaacttttctctagtatatatataaattttcacagaataacg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5516 gtatcctgatttttgcatgaacttttctctagtatatatataaattttcacagaataacg 5457
Query: 327 ttcttgtattgttcatcgtattaatgttgcggagcaacccaagccaaacattttcccgct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5456 ttcttgtattgttcatcgtattaatgttgcggagcaacccaagccaaacattttcccgct 5397
Query: 387 agtttgaaacgtcactgtcgtgcgtttagttttgtcactatatcacgtgatcgggttttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5396 agtttgaaacgtcactgtcgtgcgtttagttttgtcactatatcacgtgatcgggttttg 5337
Query: 447 ttatttttctgttctttctgctccgctgttcgtgttcgcgaacttcgtgaaacatttgaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5336 ttatttttctgttctttctgctccgctgttcgtgttcgcgaacttcgtgaaacatttgaa 5277
Query: 507 tgtttcatgagagctttatttggatcaaaaatctgatctatttaaacacactagtgaata 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5276 tgtttcatgagagctttatttggatcaaaaatctgatctatttaaacacactagtgaata 5217
Query: 567 aacgaagaacacgccaaaaaagtatcaaaaatagggatctttaatcttcaatcataaaac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5216 aacgaagaacacgccaaaaaagtatcaaaaatagggatctttaatcttcaatcataaaac 5157
Query: 627 catcatagaccatgagtgaaaaaaagccctctgcctcaaccgccgtttgaagaaaacact 686
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5156 catcatagaccatgagtgaaaaaaag-cctctgcctcaaccgccgtttgaagaaaacaca 5098
Query: 687 tgtaaattatcctaaagaggatgttagacctcgg-aagaaaaccaaacgcgatggccaat 745
||| |||||| ||||||||||||||||| ||||| |||||||| || |||||||| | ||
Sbjct: 5097 tgt-aattatactaaagaggatgttaga-ctcggtaagaaaacaaagcgcgatgg-cgat 5041
Query: 746 acccctgatgatgaattccaatttcttttcacgattttcaaagagaaaagggggagatca 805
| |||||||||||||| |||| |||||||| ||||| |||||||| || |||||||
Sbjct: 5040 gacgctgatgatgaattcgaatt--ctttcacgaatttcagagagaaaa-ggtgagatca 4984
Query: 806 tttttttcatttgattaccaaccaacttaaatt 838
|| ||||||||||||||||| |||| |||||
Sbjct: 4983 -ttaattcatttgattaccaacgaactgaaatt 4952
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9530
Number of Sequences: 1807
Number of extensions: 9530
Number of successful extensions: 89
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)