BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZC06RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1548 1405 0.0
>3x_Contig1548
Length = 9830
Score = 1405 bits (709), Expect = 0.0
Identities = 750/760 (98%), Gaps = 4/760 (0%)
Strand = Plus / Plus
Query: 49 tgggcagggtgtaagcttagaaaaagacagaatcatagcaattttgccagtacctactgt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 tgggcagggtgtaagcttagaaaaagacagaatcatagcaattttgccagtacctactgt 233
Query: 109 caacatcttcgaatgagggctctatcaaaatatatgcctttgtttataaactcatctgtc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 caacatcttcgaatgagggctctatcaaaatatatgcctttgtttataaactcatctgtc 293
Query: 169 caacttttggcattattctggttatgtaaactgaaactcttttcaatatgaaaatggcgt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 caacttttggcattattctggttatgtaaactgaaactcttttcaatatgaaaatggcgt 353
Query: 229 aataaaaatattcataacaggtacttgtcatatcgaacaagattgagttttgttcgatgc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aataaaaatattcataacaggtacttgtcatatcgaacaagattgagttttgttcgatgc 413
Query: 289 aacgaagagagtaaggatctaatggtgtcgaatcatatgccagagagattgttcatagtg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aacgaagagagtaaggatctaatggtgtcgaatcatatgccagagagattgttcatagtg 473
Query: 349 gatcatgtcagtagaaattgattgggataatatccgtggggatttaagcgttaatcaagg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gatcatgtcagtagaaattgattgggataatatccgtggggatttaagcgttaatcaagg 533
Query: 409 tgtgaaggactttttaaactctcggctacaagagtttgaactgcccagttacgtgaataa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgtgaaggactttttaaactctcggctacaagagtttgaactgcccagttacgtgaataa 593
Query: 469 tcttaaggtaactaatttcgatttaggtactatgcctccaaatgttatattaaaacagat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tcttaaggtaactaatttcgatttaggtactatgcctccaaatgttatattaaaacagat 653
Query: 529 ggatgatcctttagatgagttttattcttatctgttacaagaaggagatatttcaaaaga 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ggatgatcctttagatgagttttattcttatctgttacaagaaggagatatttcaaaaga 713
Query: 589 agctgcgaaggataagaacactgatgtgcaactattagtggaacttgattataaaggtga 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 agctgcgaaggataagaacactgatgtgcaactattagtggaacttgattataaaggtga 773
Query: 649 tatgagcattgaattgtcagctgatcttgttcttaattacccgagcccgccaggtcatga 708
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 774 tatgagcattgaattgtcagctgatcttgttcttaattacccgagcccg-cagttcatga 832
Query: 709 ttttaccagttaagctacgaataagtgatattgggcatgcactggttattcctgctcgca 768
|||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct: 833 ttttaccagttaagctacgaataagtgatatt-ggcatgcactgcttatgcctgctcgca 891
Query: 769 tatttggagaaaccgccttttttattaatttcctatgtga 808
|||||| |||||| || ||||||||| ||||||||||||
Sbjct: 892 tatttgaagaaacagc--tttttattagtttcctatgtga 929
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6678
Number of Sequences: 1807
Number of extensions: 6678
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)