BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC27ZC07FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1173 1170 0.0
>3x_Contig1173
Length = 7454
Score = 1170 bits (590), Expect = 0.0
Identities = 614/622 (98%)
Strand = Plus / Minus
Query: 91 cccatattatgagcctctatcacttgatgaatttaaaaagagctggtttgactgtcatgg 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 cccatattatgagcctctatcacttgatgaatttaaaaagagctggtttgactgtcatgg 1005
Query: 151 tgtgttatgtgtcatggttctcggtgaacttccggagttagattactcagtaccaattaa 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 tgtgttatgtgtcatggttctcggtgaacttccggagttagattactcagtaccaattaa 945
Query: 211 ccgctctgaagaattatatgaagtattaggcctgaaatatagtgaaaggtttacgtcaac 270
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 ccgctctgaagaaatagatgaagtattaggcctgaaatatagtgaaaggtttacgtcaac 885
Query: 271 ttatatgaaaagaaaggaacgtcgtaatttgaacctcagcattcaatgggagagacagtg 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 ttatatgaaaagaaaggaacgtcgtaatttgaacctcagcattcaatgggagagacagtg 825
Query: 331 tcttggaatttttgatttaaaacctgcatatccaggccgttcttctcatgtcgccactgg 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 tcttggaatttttgatttaaaacctgcatatccaggccgttcttctcatgtcgccactgg 765
Query: 391 cacattcctggtaaatgcaggtattagagggaaaggtattggcaaaactttagtggattg 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 cacattcctggtaaatgcaggtattagagggaaaggtattggcaaaactttagtggattg 705
Query: 451 ttttctgaactgggctcctcagcttgggtttacatcgtgttactttccgttggtatacgg 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ttttctgaactgggctcctcagcttgggtttacatcgtgttactttccgttggtatacgg 645
Query: 511 tactaatgtaggaatacgaagaatatttgagtcatctaactttaggagaattggaaaact 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 tactaatgtaggaatacgaagaatatttgagtcatctaactttaggagaattggaaaact 585
Query: 571 tccagaatcaggtattttgaaaggatttgactctccagtagactcattcatatttgggaa 630
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 584 tccagaatcaggtattttgaaaggatttgactctccagtagactcattcatatatggtaa 525
Query: 631 agagtttactcatgttagtaaacacatgaactctttacattcattagtgggcgacacttt 690
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct: 524 agagtttactcatgttagtaaacacatgaactctttacattcatcagtggacgacactat 465
Query: 691 aaaagcaaaatacgatagactc 712
||||||||||||||| ||||||
Sbjct: 464 aaaagcaaaatacgaaagactc 443
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8788
Number of Sequences: 1807
Number of extensions: 8788
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)